TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
LAML	TCGA-AB-2956-03A	TCGA-AB-2956	MLL\|MLLT3	MLL	MLLT3	11	9	1	-1	9	10	9	1.2	118353210	20365742	tier1	In-frame	10455	NA	0.38125
LAML	TCGA-AB-2883-03A	TCGA-AB-2883	MLL\|MLLT4	MLL	MLLT4	11	6	1	1	13	16	16	0.38	118355029	168265231	tier1	In-frame	10456	NA	0.39579
LAML	TCGA-AB-2893-03A	TCGA-AB-2893	MLL\|MLLT4	MLL	MLLT4	11	6	1	1	10	11	11	0.38	118353210	168265231	tier4	In-frame	10457	NA	0.39579
LGG	TCGA-DU-A7T6-01A	TCGA-DU-A7T6	MLL\|IGHMBP2	MLL	IGHMBP2	11	11	1	1	4	6	5	8.2	118382740	68685204	tier1	Out-of-frame	10450	NA	0.38049
SKCM	TCGA-EB-A4XL-01A	TCGA-EB-A4XL	MLL\|ZDHHC7	MLL	ZDHHC7	11	16	1	-1	9	5	4	2	118307659	85010831	tier1	Out-of-frame	10459	NA	0.37997
PAAD	TCGA-3A-A9IS-01A	TCGA-3A-A9IS	TTR\|TYK2	TTR	TYK2	18	19	1	-1	2	1	1	0.55	29178984	10491352	tier3	3UTR-5UTR	18916	NA	0
LIHC	TCGA-FV-A2QR-01A	TCGA-FV-A2QR	TTR\|ARFGEF2	TTR	ARFGEF2	18	20	1	1	2	3	2	3.9	29178984	47615777	tier4	3UTR-CDS	18915	NA	0
UCEC	TCGA-AJ-A3IA-01A	TCGA-AJ-A3IA	PHF3\|ENPP3	PHF3	ENPP3	6	6	1	1	8	3	3	0.29	64356700	131958375	tier1	CDS-5UTR	12736	NA	0.34987
BRCA	TCGA-BH-A1EN-01A	TCGA-BH-A1EN	PHF3\|EYS	PHF3	EYS	6	6	1	-1	18	1	1	0.26	64356700	64791895	tier3	In-frame	12737	NA	0.35577
PRAD	TCGA-KK-A8I4-01A	TCGA-KK-A8I4	PHF3\|R3HCC1	PHF3	R3HCC1	6	8	1	1	47	47	41	0.15	64346055	23146019	tier1	5UTR-5UTR	12739	NA	0.3499
SARC	TCGA-SI-A71O-01A	TCGA-SI-A71O	PHF3\|SYT4	PHF3	SYT4	6	18	1	-1	5	5	5	0.002	64356700	40854359	tier4	In-frame	12740	NA	0.36432
SKCM	TCGA-EB-A82B-01A	TCGA-EB-A82B	PHF3\|C6orf123	PHF3	C6orf123	6	6	1	-1	24	15	15	0.34	64346055	168191773	tier1	5UTR-5UTR	12735	NA	0
UVM	TCGA-VD-A8KJ-01A	TCGA-VD-A8KJ	PHF3\|QKI	PHF3	QKI	6	6	1	1	19	21	18	0.8	64346055	163983014	tier1	5UTR-CDS	12738	NA	0.36095
ACC	TCGA-OR-A5KT-01A	TCGA-OR-A5KT	SLC16A7\|RP11-762I7.5	SLC16A7	RP11-762I7.5	12	12	1	-1	10	11	10	3.5	59990017	56154424	tier1	NA	16039	NA	0
BLCA	TCGA-DK-AA71-01A	TCGA-DK-AA71	SLC16A7\|HOXC13	SLC16A7	HOXC13	12	12	1	1	2	1	1	1.4	59990017	54338784	tier3	5UTR-CDS	16036	NA	0
GBM	TCGA-26-5135-01A	TCGA-26-5135	SLC16A7\|RP11-362K2.2	SLC16A7	RP11-362K2.2	12	12	1	1	24	131	110	0.23	59990017	59206196	tier1	5UTR-CDS	16038	non-validated	0
SARC	TCGA-DX-A7EI-01A	TCGA-DX-A7EI	SLC16A7\|ACSS3	SLC16A7	ACSS3	12	12	1	1	81	55	47	0.78	59990017	81528595	tier1	5UTR-CDS	16033	NA	0
SARC	TCGA-DX-A1KU-01A	TCGA-DX-A1KU	SLC16A7\|BEST3	SLC16A7	BEST3	12	12	1	-1	2	1	1	0.57	60169256	70072673	tier2	In-frame	16034	non-validated	0
SARC	TCGA-DX-A1L0-01A	TCGA-DX-A1L0	SLC16A7\|NUP107	SLC16A7	NUP107	12	12	1	1	212	175	150	0.17	59990017	69127232	tier1	5UTR-CDS	16037	validated	0
SARC	TCGA-SG-A6Z7-01A	TCGA-SG-A6Z7	SLC16A7\|SYT1	SLC16A7	SYT1	12	12	1	1	46	20	17	0.064	59990017	79441077	tier1	5UTR-5UTR	16040	NA	0

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