Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-55-8085-01A | TCGA-55-8085 | RPS6KA1|LIN28A | RPS6KA1 | LIN28A | 1 | 1 | 1 | 1 | 12 | 13 | 11 | 0.13 | 26885428 | 26751794 | tier1 | In-frame | 15044 | NA | 0 |
| LUAD | TCGA-55-6543-01A | TCGA-55-6543 | MUC5B|ZNFX1 | MUC5B | ZNFX1 | 11 | 20 | 1 | -1 | 2 | 36 | 33 | 0.11 | 1283402 | 47863418 | tier3 | 3UTR-CDS | 10859 | NA | 0.35933 |
| KICH | TCGA-KL-8332-01A | TCGA-KL-8332 | CTSD|EEA1 | CTSD | EEA1 | 11 | 12 | -1 | -1 | 2 | 4 | 1 | 0.21 | 1773982 | 93229203 | tier3 | NA | 4403 | non-validated | 0.3761 |
| THCA | TCGA-EM-A2CS-06A | TCGA-EM-A2CS | CTSD|ARFGEF2 | CTSD | ARFGEF2 | 11 | 20 | -1 | 1 | 2 | 4 | 2 | 0.19 | 1773982 | 47615777 | tier3 | 3UTR-CDS | 4402 | NA | 0.36855 |
| BRCA | TCGA-OL-A5D7-01A | TCGA-OL-A5D7 | STK11|KDM4B | STK11 | KDM4B | 19 | 19 | 1 | 1 | 30 | 13 | 11 | 0.65 | 1207202 | 5032877 | tier1 | CDS-5UTR | 17052 | NA | 0 |
| BLCA | TCGA-DK-AA6R-01A | TCGA-DK-AA6R | STK11|C19orf26 | STK11 | C19orf26 | 19 | 19 | 1 | -1 | 4 | 7 | 5 | 0.024 | 1207202 | 1231274 | tier1 | Out-of-frame | 17050 | NA | 0 |
| BRCA | TCGA-OL-A66I-01A | TCGA-OL-A66I | STK11|SMARCD2 | STK11 | SMARCD2 | 19 | 17 | 1 | -1 | 9 | 2 | 2 | 0.32 | 1207202 | 61914985 | tier1 | Out-of-frame | 17053 | NA | 0 |
| LUAD | TCGA-NJ-A4YF-01A | TCGA-NJ-A4YF | STK11|HMHA1 | STK11 | HMHA1 | 19 | 19 | 1 | 1 | 30 | 27 | 25 | 0.041 | 1222005 | 1080254 | tier1 | In-frame | 17051 | NA | 0 |
| LUAD | TCGA-62-8395-01A | TCGA-62-8395 | STK11|SRFBP1 | STK11 | SRFBP1 | 19 | 5 | 1 | 1 | 5 | 6 | 6 | 0.33 | 1207202 | 121354955 | tier1 | Out-of-frame | 17054 | NA | 0 |
| LUAD | TCGA-97-8174-01A | TCGA-97-8174 | MLL|FYN | MLL | FYN | 11 | 6 | 1 | -1 | 14 | 19 | 18 | 0.004 | 118382740 | 112025305 | tier1 | Out-of-frame | 10449 | NA | 0.39684 |
| LAML | TCGA-AB-2832-03A | TCGA-AB-2832 | MLL|MLLT10 | MLL | MLLT10 | 11 | 10 | 1 | 1 | 6 | 7 | 7 | 0.87 | 118355029 | 21959378 | tier1 | In-frame | 10451 | NA | 0.38046 |
| LAML | TCGA-AB-2842-03A | TCGA-AB-2842 | MLL|MLLT10 | MLL | MLLT10 | 11 | 10 | 1 | 1 | 4 | 15 | 15 | 0.87 | 118353210 | 21875223 | tier1 | In-frame | 10452 | NA | 0.38046 |
| LAML | TCGA-AB-2985-03A | TCGA-AB-2985 | MLL|MLLT10 | MLL | MLLT10 | 11 | 10 | 1 | 1 | 4 | 9 | 9 | 0.87 | 118355690 | 21940602 | tier1 | In-frame | 10453 | non-validated | 0.38046 |
| LAML | TCGA-AB-3005-03A | TCGA-AB-3005 | MLL|MLLT10 | MLL | MLLT10 | 11 | 10 | 1 | 1 | 7 | 9 | 9 | 0.87 | 118350953 | 22002701 | tier1 | In-frame | 10454 | validated | 0.38046 |
| CESC | TCGA-C5-A1M7-01A | TCGA-C5-A1M7 | MLL|CD86 | MLL | CD86 | 11 | 3 | 1 | 1 | 2 | 1 | 1 | 0.46 | 118355690 | 121838285 | tier3 | Out-of-frame | 10445 | NA | 0.38615 |
| BLCA | TCGA-BT-A2LA-01A | TCGA-BT-A2LA | MLL|SLC22A10 | MLL | SLC22A10 | 11 | 11 | 1 | 1 | 2 | 3 | 3 | 0.11 | 118345030 | 63137095 | tier2 | CDS-3UTR | 10458 | non-validated | 0.38045 |
| ACC | TCGA-OR-A5J1-01A | TCGA-OR-A5J1 | MLL|ATP5L | MLL | ATP5L | 11 | 11 | 1 | 1 | 14 | 6 | 3 | 3.2 | 118353210 | 118301739 | tier1 | In-frame | 10444 | NA | 0.38045 |
| LAML | TCGA-AB-2834-03A | TCGA-AB-2834 | MLL|ELL | MLL | ELL | 11 | 19 | 1 | -1 | 14 | 22 | 18 | 0.2 | 118353210 | 18576728 | tier1 | In-frame | 10446 | NA | 0.3802 |
| LAML | TCGA-AB-2844-03A | TCGA-AB-2844 | MLL|ELL | MLL | ELL | 11 | 19 | 1 | -1 | 25 | 14 | 13 | 0.2 | 118355029 | 18583692 | tier1 | In-frame | 10447 | NA | 0.3802 |
| LAML | TCGA-AB-2911-03A | TCGA-AB-2911 | MLL|ELL | MLL | ELL | 11 | 19 | 1 | -1 | 6 | 10 | 10 | 0.2 | 118355690 | 18569139 | tier1 | In-frame | 10448 | NA | 0.3802 |
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