Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SKCM | TCGA-EB-A42Z-01A | TCGA-EB-A42Z | ECE1|PLA2G5 | ECE1 | PLA2G5 | 1 | 1 | -1 | 1 | 12 | 7 | 2 | 0.017 | 21616563 | 20411314 | tier1 | CDS-5UTR | 5259 | NA | 0.35008 |
| UCEC | TCGA-AJ-A3BF-01A | TCGA-AJ-A3BF | ECE1|WNT4 | ECE1 | WNT4 | 1 | 1 | -1 | -1 | 81 | 49 | 44 | 0.061 | 21599192 | 22448069 | tier1 | In-frame | 5260 | NA | 0.35297 |
| SKCM | TCGA-EB-A42Z-01A | TCGA-EB-A42Z | ECE1|FAM183A | ECE1 | FAM183A | 1 | 1 | -1 | 1 | 2 | 2 | 2 | 0.28 | 21671869 | 43616432 | tier2 | Out-of-frame | 5258 | NA | 0.34971 |
| STAD | TCGA-BR-8289-01A | TCGA-BR-8289 | GALE|PITHD1 | GALE | PITHD1 | 1 | 1 | -1 | 1 | 57 | 100 | 91 | 1 | 24125856 | 24112165 | tier1 | 5UTR-CDS | 6909 | NA | 0.33447 |
| STAD | TCGA-CG-4449-01A | TCGA-CG-4449 | CD46|MAPKAPK2 | CD46 | MAPKAPK2 | 1 | 1 | 1 | 1 | 51 | 93 | 89 | 1.2 | 207959027 | 206902055 | tier1 | Out-of-frame | 3274 | NA | 0.38524 |
| LUAD | TCGA-L9-A444-01A | TCGA-L9-A444 | APH1A|SLAMF1 | APH1A | SLAMF1 | 1 | 1 | -1 | -1 | 57 | 19 | 16 | 4.1 | 150239475 | 160580588 | tier1 | In-frame | 1115 | NA | 0.36995 |
| LUAD | TCGA-55-6982-01A | TCGA-55-6982 | LEPRE1|ERI3 | LEPRE1 | ERI3 | 1 | 1 | -1 | -1 | 28 | 21 | 16 | 0.054 | 43227994 | 44687312 | tier1 | Out-of-frame | 9297 | non-validated | 0.34293 |
| BRCA | TCGA-D8-A1XT-01A | TCGA-D8-A1XT | SLC2A1|GRHL3 | SLC2A1 | GRHL3 | 1 | 1 | -1 | 1 | 11 | 6 | 6 | 1 | 43424305 | 24657916 | tier1 | CDS-5UTR | 16126 | NA | 0 |
| HNSC | TCGA-F7-A61W-01A | TCGA-F7-A61W | AKR1A1|EIF2C3 | AKR1A1 | EIF2C3 | 1 | 1 | 1 | 1 | 4 | 6 | 5 | 2.9 | 46027550 | 36469942 | tier1 | CDS-5UTR | 755 | NA | 0.35697 |
| BRCA | TCGA-OL-A5D7-01A | TCGA-OL-A5D7 | PIK3R3|LRRC41 | PIK3R3 | LRRC41 | 1 | 1 | -1 | -1 | 8 | 4 | 4 | 0.64 | 46527601 | 46747057 | tier1 | Out-of-frame | 12848 | NA | 0.37609 |
| HNSC | TCGA-CV-7414-01A | TCGA-CV-7414 | PIK3R3|ZSWIM5 | PIK3R3 | ZSWIM5 | 1 | 1 | -1 | -1 | 7 | 5 | 2 | 0.33 | 46597519 | 45553909 | tier1 | In-frame | 12850 | NA | 0.37582 |
| PRAD | TCGA-ZG-A9M4-01A | TCGA-ZG-A9M4 | PIK3R3|MYO18A | PIK3R3 | MYO18A | 1 | 17 | -1 | -1 | 2 | 6 | 6 | 1.5 | 46543187 | 27423933 | tier3 | Out-of-frame | 12849 | NA | 0.37561 |
| UCS | TCGA-N9-A4Q8-01A | TCGA-N9-A4Q8 | PIK3R3|LRRC41 | PIK3R3 | LRRC41 | 1 | 1 | -1 | -1 | 13 | 12 | 12 | 0.64 | 46543187 | 46752171 | tier1 | Out-of-frame | 12847 | NA | 0.37609 |
| LUAD | TCGA-NJ-A4YF-01A | TCGA-NJ-A4YF | FAAH|RAD54L | FAAH | RAD54L | 1 | 1 | 1 | 1 | 3 | 5 | 5 | 0.23 | 46872040 | 46733131 | tier1 | In-frame | 5972 | NA | 0.348 |
| PRAD | TCGA-CH-5764-01A | TCGA-CH-5764 | ABCD3|DPYD | ABCD3 | DPYD | 1 | 1 | 1 | -1 | 10 | 8 | 6 | 0.16 | 94956803 | 97981497 | tier1 | In-frame | 73 | NA | 0.36018 |
| BLCA | TCGA-GV-A3QH-01A | TCGA-GV-A3QH | ABCD3|ARHGAP29 | ABCD3 | ARHGAP29 | 1 | 1 | 1 | -1 | 15 | 7 | 7 | 0.063 | 94884144 | 94685948 | tier1 | Out-of-frame | 72 | NA | 0.37051 |
| LUSC | TCGA-66-2756-01A | TCGA-66-2756 | ABCD3|AK5 | ABCD3 | AK5 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 0.14 | 94965170 | 77876666 | tier3 | In-frame | 71 | non-validated | 0.35871 |
| LIHC | TCGA-DD-A11C-01A | TCGA-DD-A11C | SERPINC1|STAT6 | SERPINC1 | STAT6 | 1 | 12 | -1 | -1 | 3 | 6 | 6 | 0.23 | 173872948 | 57496773 | tier1 | NA | 15668 | NA | 0 |
| LUSC | TCGA-NC-A5HR-01A | TCGA-NC-A5HR | SLC35A3|C1orf194 | SLC35A3 | C1orf194 | 1 | 1 | 1 | -1 | 23 | 8 | 6 | 0.49 | 100436200 | 109649281 | tier1 | Out-of-frame | 16154 | NA | 0 |
| BRCA | TCGA-E2-A106-01A | TCGA-E2-A106 | RPS6KA1|RASGRP3 | RPS6KA1 | RASGRP3 | 1 | 2 | 1 | 1 | 20 | 11 | 11 | 1.9 | 26863460 | 33759390 | tier1 | In-frame | 15045 | NA | 0 |
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