Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-A8-A07O-01A | TCGA-A8-A07O | MTR|IFI16 | MTR | IFI16 | 1 | 1 | 1 | 1 | 6 | 3 | 3 | 1.1 | 237001899 | 159021469 | tier1 | In-frame | 10836 | NA | 0.36755 |
| SKCM | TCGA-ER-A197-06A | TCGA-ER-A197 | AKT3|PTPRR | AKT3 | PTPRR | 1 | 12 | -1 | -1 | 11 | 12 | 12 | 0.18 | 243776973 | 71078044 | tier1 | In-frame | 765 | NA | 0.38391 |
| GBM | TCGA-19-2619-01A | TCGA-19-2619 | AKT3|C1orf150 | AKT3 | C1orf150 | 1 | 1 | -1 | 1 | 5 | 16 | 15 | 0.22 | 244006427 | 247690242 | tier1 | CDS-5UTR | 762 | NA | 0 |
| GBM | TCGA-06-0216-01B | TCGA-06-0216 | AKT3|RGS7 | AKT3 | RGS7 | 1 | 1 | -1 | -1 | 6 | 14 | 12 | 0.037 | 244006427 | 240990472 | tier1 | Out-of-frame | 766 | NA | 0.38515 |
| MESO | TCGA-UT-A88E-01B | TCGA-UT-A88E | AKT3|HEATR1 | AKT3 | HEATR1 | 1 | 1 | -1 | -1 | 88 | 63 | 57 | 1.5 | 243800913 | 236714290 | tier1 | Out-of-frame | 763 | NA | 0.38223 |
| PRAD | TCGA-ZG-A9KY-01A | TCGA-ZG-A9KY | AKT3|ADSS | AKT3 | ADSS | 1 | 1 | -1 | -1 | 15 | 17 | 15 | 1.8 | 244006427 | 244601070 | tier1 | Out-of-frame | 761 | NA | 0.38212 |
| PRAD | TCGA-KK-A8IL-01A | TCGA-KK-A8IL | AKT3|PPP2R2A | AKT3 | PPP2R2A | 1 | 8 | -1 | 1 | 13 | 10 | 8 | 0.059 | 244006427 | 26211984 | tier1 | Out-of-frame | 764 | NA | 0.38198 |
| LUAD | TCGA-55-7573-01A | TCGA-55-7573 | SLAMF1|CD1A | SLAMF1 | CD1A | 1 | 1 | -1 | 1 | 2 | 1 | 1 | 1 | 160616660 | 158224874 | tier3 | In-frame | 16000 | NA | 0 |
| LUAD | TCGA-86-7953-01A | TCGA-86-7953 | SLAMF1|CD1A | SLAMF1 | CD1A | 1 | 1 | -1 | 1 | 3 | 1 | 1 | 1 | 160604403 | 158224874 | tier4 | In-frame | 16001 | NA | 0 |
| THCA | TCGA-FE-A232-01A | TCGA-FE-A232 | SLAMF1|CD1A | SLAMF1 | CD1A | 1 | 1 | -1 | 1 | 2 | 1 | 1 | 1 | 160616660 | 158224874 | tier3 | In-frame | 16002 | NA | 0 |
| LUAD | TCGA-55-8619-01A | TCGA-55-8619 | SLAMF1|CD1C | SLAMF1 | CD1C | 1 | 1 | -1 | 1 | 2 | 1 | 1 | 4.3 | 160616660 | 158260924 | tier3 | In-frame | 16003 | NA | 0 |
| PRAD | TCGA-EJ-A46G-01A | TCGA-EJ-A46G | LPHN2|AK5 | LPHN2 | AK5 | 1 | 1 | 1 | 1 | 140 | 81 | 78 | 0.072 | 82302742 | 77759478 | tier1 | In-frame | 9445 | NA | 0.36484 |
| PCPG | TCGA-WB-A81J-01A | TCGA-WB-A81J | KDM5B|ITPKB | KDM5B | ITPKB | 1 | 1 | -1 | -1 | 27 | 12 | 11 | 0.47 | 202742246 | 226836472 | tier1 | In-frame | 8694 | NA | 0.36241 |
| BRCA | TCGA-A2-A1FW-01A | TCGA-A2-A1FW | KDM5B|RABGAP1L | KDM5B | RABGAP1L | 1 | 1 | -1 | 1 | 8 | 12 | 11 | 0.012 | 202742246 | 174340117 | tier1 | Out-of-frame | 8697 | NA | 0.33516 |
| LGG | TCGA-FG-5965-02B | TCGA-FG-5965 | KDM5B|PPP1R12B | KDM5B | PPP1R12B | 1 | 1 | -1 | 1 | 9 | 5 | 4 | 0.02 | 202743741 | 202385915 | tier1 | In-frame | 8696 | non-validated | 0.3599 |
| LGG | TCGA-DU-6542-01A | TCGA-DU-6542 | KDM5B|UAP1 | KDM5B | UAP1 | 1 | 1 | -1 | 1 | 7 | 6 | 6 | 0.004 | 202777230 | 162535802 | tier1 | CDS-5UTR | 8699 | NA | 0.33246 |
| SARC | TCGA-DX-A8BV-01A | TCGA-DX-A8BV | KDM5B|PPP1R12B | KDM5B | PPP1R12B | 1 | 1 | -1 | 1 | 10 | 6 | 6 | 0.02 | 202742246 | 202536906 | tier1 | In-frame | 8695 | NA | 0.3599 |
| SKCM | TCGA-EE-A3J5-06A | TCGA-EE-A3J5 | KDM5B|RASAL2 | KDM5B | RASAL2 | 1 | 1 | -1 | 1 | 4 | 1 | 1 | 0.02 | 202777230 | 178389646 | tier2 | In-frame | 8698 | non-validated | 0.3636 |
| PCPG | TCGA-WB-A81S-01A | TCGA-WB-A81S | RGS4|SERPINF2 | RGS4 | SERPINF2 | 1 | 17 | 1 | 1 | 7 | 5 | 3 | 0.077 | 163039318 | 1648286 | tier1 | CDS-5UTR | 14643 | NA | 0 |
| SKCM | TCGA-D3-A2J6-06A | TCGA-D3-A2J6 | CDK18|CNTN2 | CDK18 | CNTN2 | 1 | 1 | 1 | 1 | 6 | 1 | 1 | 0.094 | 205473924 | 205027049 | tier2 | 5UTR-CDS | 3424 | NA | 0.36283 |
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