Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-DX-AB2S-01A | TCGA-DX-AB2S | ASH1L|RC3H1 | ASH1L | RC3H1 | 1 | 1 | -1 | -1 | 6 | 2 | 2 | 0.009 | 155531944 | 173962273 | tier1 | 5UTR-5UTR | 1524 | NA | 0.36225 |
| SARC | TCGA-IW-A3M5-01A | TCGA-IW-A3M5 | ASH1L|RIT1 | ASH1L | RIT1 | 1 | 1 | -1 | -1 | 8 | 2 | 2 | 0.12 | 155307880 | 155874595 | tier1 | In-frame | 1526 | non-validated | 0.37804 |
| UCEC | TCGA-A5-A3LP-01A | TCGA-A5-A3LP | ASH1L|IQGAP3 | ASH1L | IQGAP3 | 1 | 1 | -1 | -1 | 25 | 18 | 15 | 2.6 | 155531944 | 156501039 | tier1 | 5UTR-CDS | 1522 | NA | 0.36549 |
| GBM | TCGA-08-0386-01A | TCGA-08-0386 | SRM|SMEK1 | SRM | SMEK1 | 1 | 14 | -1 | -1 | 3 | 10 | 7 | 2.2 | 11118857 | 91957146 | tier1 | Out-of-frame | 16855 | NA | 0 |
| ESCA | TCGA-2H-A9GH-01A | TCGA-2H-A9GH | LEPR|MEF2D | LEPR | MEF2D | 1 | 1 | 1 | -1 | 2 | 8 | 8 | 1.8 | 66070920 | 156438812 | tier2 | In-frame | 9296 | NA | 0.38374 |
| KIRC | TCGA-B0-4945-01A | TCGA-B0-4945 | SLC35D1|PRKAR2B | SLC35D1 | PRKAR2B | 1 | 7 | -1 | 1 | 3 | 1 | 1 | 0.82 | 67515465 | 106762397 | tier2 | Out-of-frame | 16159 | NA | 0 |
| THYM | TCGA-ZB-A969-01A | TCGA-ZB-A969 | PRDM2|LRRC38 | PRDM2 | LRRC38 | 1 | 1 | 1 | -1 | 9 | 6 | 6 | 0.015 | 14075982 | 13802567 | tier1 | In-frame | 13502 | NA | 0.36978 |
| SARC | TCGA-DX-A1KU-01A | TCGA-DX-A1KU | UCHL5|C1orf112 | UCHL5 | C1orf112 | 1 | 1 | -1 | 1 | 29 | 16 | 13 | 3.6 | 192990227 | 169818641 | tier1 | In-frame | 19177 | validated | 0 |
| KIRC | TCGA-CJ-4894-01A | TCGA-CJ-4894 | WARS2|REG4 | WARS2 | REG4 | 1 | 1 | -1 | -1 | 12 | 4 | 4 | 0.81 | 119683178 | 120337308 | tier1 | Out-of-frame | 19713 | NA | 0 |
| SKCM | TCGA-D3-A5GS-06A | TCGA-D3-A5GS | WARS2|NTNG1 | WARS2 | NTNG1 | 1 | 1 | -1 | 1 | 25 | 15 | 13 | 0.47 | 119618973 | 108023233 | tier1 | Out-of-frame | 19711 | NA | 0 |
| BRCA | TCGA-E9-A243-01A | TCGA-E9-A243 | WARS2|TPST1 | WARS2 | TPST1 | 1 | 7 | -1 | 1 | 18 | 7 | 6 | 0.21 | 119618973 | 65817492 | tier1 | In-frame | 19716 | NA | 0 |
| CESC | TCGA-C5-A7X5-01A | TCGA-C5-A7X5 | WARS2|TMEM87B | WARS2 | TMEM87B | 1 | 2 | -1 | 1 | 2 | 4 | 4 | 1.8 | 119618973 | 112832489 | tier2 | In-frame | 19715 | NA | 0 |
| CESC | TCGA-C5-A7X5-01A | TCGA-C5-A7X5 | WARS2|ZAR1 | WARS2 | ZAR1 | 1 | 4 | -1 | 1 | 8 | 2 | 2 | 1.8 | 119618973 | 48496118 | tier1 | In-frame | 19717 | NA | 0 |
| DLBC | TCGA-GR-7353-01A | TCGA-GR-7353 | WARS2|RPF1 | WARS2 | RPF1 | 1 | 1 | -1 | 1 | 38 | 33 | 32 | 0.48 | 119683178 | 84961565 | tier1 | In-frame | 19714 | NA | 0 |
| LUAD | TCGA-55-A490-01A | TCGA-55-A490 | WARS2|DLG2 | WARS2 | DLG2 | 1 | 11 | -1 | -1 | 3 | 1 | 1 | 0.019 | 119683178 | 84865695 | tier2 | In-frame | 19710 | NA | 0 |
| LUSC | TCGA-60-2725-01A | TCGA-60-2725 | WARS2|PHGDH | WARS2 | PHGDH | 1 | 1 | -1 | 1 | 9 | 6 | 6 | 0.32 | 119618973 | 120263793 | tier1 | In-frame | 19712 | NA | 0 |
| BLCA | TCGA-FD-A3B4-01A | TCGA-FD-A3B4 | LGALS8|RHBG | LGALS8 | RHBG | 1 | 1 | 1 | 1 | 13 | 4 | 4 | 0.46 | 236689415 | 156344398 | tier1 | CDS-5UTR | 9311 | NA | 0.36049 |
| BLCA | TCGA-DK-AA6P-01A | TCGA-DK-AA6P | LGALS8|EDARADD | LGALS8 | EDARADD | 1 | 1 | 1 | 1 | 3 | 5 | 5 | 0.055 | 236708215 | 236645567 | tier1 | Out-of-frame | 9310 | NA | 0.36316 |
| BRCA | TCGA-BH-A203-01A | TCGA-BH-A203 | LGALS8|EDARADD | LGALS8 | EDARADD | 1 | 1 | 1 | 1 | 7 | 8 | 6 | 0.055 | 236681584 | 236645567 | tier1 | 5UTR-CDS | 9309 | NA | 0.36316 |
| BRCA | TCGA-E2-A15M-01A | TCGA-E2-A15M | LGALS8|TRIM67 | LGALS8 | TRIM67 | 1 | 1 | 1 | 1 | 7 | 5 | 5 | 0.61 | 236689415 | 231333117 | tier1 | In-frame | 9312 | NA | 0.36583 |
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