Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| GBM | TCGA-27-2519-01A | TCGA-27-2519 | HDAC1|SERINC2 | HDAC1 | SERINC2 | 1 | 1 | 1 | 1 | 3 | 2 | 1 | 2 | 32768334 | 31883232 | tier2 | In-frame | 7615 | NA | 0.368 |
| LGG | TCGA-HT-7860-01A | TCGA-HT-7860 | HDAC1|LRRC42 | HDAC1 | LRRC42 | 1 | 1 | 1 | 1 | 4 | 5 | 5 | 0.53 | 32757819 | 54417659 | tier1 | CDS-5UTR | 7613 | NA | 0.3697 |
| STAD | TCGA-BR-A4J1-01A | TCGA-BR-A4J1 | HDAC1|EIF3I | HDAC1 | EIF3I | 1 | 1 | 1 | 1 | 24 | 352 | 332 | 1.3 | 32768334 | 32694100 | tier1 | In-frame | 7611 | NA | 0.37671 |
| CESC | TCGA-DS-A1OC-01A | TCGA-DS-A1OC | CAPZA1|MIER1 | CAPZA1 | MIER1 | 1 | 1 | 1 | 1 | 4 | 1 | 1 | 2.1 | 113189895 | 67442278 | tier3 | Out-of-frame | 2977 | NA | 0.37292 |
| LUAD | TCGA-91-A4BC-01A | TCGA-91-A4BC | ASH1L|INSRR | ASH1L | INSRR | 1 | 1 | -1 | -1 | 11 | 11 | 8 | 0.62 | 155490891 | 156824095 | tier1 | Out-of-frame | 1521 | NA | 0.37451 |
| SARC | TCGA-DX-A1KY-01A | TCGA-DX-A1KY | ASH1L|SELL | ASH1L | SELL | 1 | 1 | -1 | -1 | 44 | 51 | 49 | 1 | 155531944 | 169665694 | tier1 | 5UTR-CDS | 1527 | NA | 0.38021 |
| STAD | TCGA-BR-4357-01A | TCGA-BR-4357 | ASH1L|SLC28A3 | ASH1L | SLC28A3 | 1 | 9 | -1 | -1 | 5 | 15 | 14 | 0.17 | 155531944 | 86909190 | tier1 | 5UTR-CDS | 1528 | NA | 0.36022 |
| BLCA | TCGA-4Z-AA87-01A | TCGA-4Z-AA87 | ASH1L|GON4L | ASH1L | GON4L | 1 | 1 | -1 | -1 | 8 | 4 | 4 | 0.27 | 155531944 | 155730432 | tier1 | 5UTR-CDS | 1518 | NA | 0.36551 |
| BLCA | TCGA-DK-A6B1-01A | TCGA-DK-A6B1 | ASH1L|SPRR2G | ASH1L | SPRR2G | 1 | 1 | -1 | -1 | 2 | 3 | 2 | 0.83 | 155408118 | 153122607 | tier3 | CDS-5UTR | 1529 | NA | 0.35939 |
| BLCA | TCGA-XF-AAMY-01A | TCGA-XF-AAMY | ASH1L|UBQLN4 | ASH1L | UBQLN4 | 1 | 1 | -1 | -1 | 7 | 5 | 5 | 1.5 | 155531944 | 156021648 | tier1 | 5UTR-CDS | 1530 | NA | 0.37296 |
| BRCA | TCGA-A8-A07I-01A | TCGA-A8-A07I | ASH1L|AIM2 | ASH1L | AIM2 | 1 | 1 | -1 | -1 | 7 | 3 | 2 | 0.65 | 155531944 | 159043309 | tier1 | 5UTR-5UTR | 1513 | non-validated | 0.36049 |
| BRCA | TCGA-A7-A26G-01A | TCGA-A7-A26G | ASH1L|ARHGEF2 | ASH1L | ARHGEF2 | 1 | 1 | -1 | -1 | 22 | 13 | 11 | 0.54 | 155408118 | 155952991 | tier1 | CDS-5UTR | 1514 | non-validated | 0.38201 |
| BRCA | TCGA-AR-A0TT-01A | TCGA-AR-A0TT | ASH1L|FAM78B | ASH1L | FAM78B | 1 | 1 | -1 | -1 | 11 | 17 | 16 | 0.016 | 155365250 | 166040000 | tier1 | Out-of-frame | 1516 | NA | 0.36164 |
| BRCA | TCGA-A8-A090-01A | TCGA-A8-A090 | ASH1L|GATAD2B | ASH1L | GATAD2B | 1 | 1 | -1 | -1 | 3 | 2 | 2 | 0.92 | 155490891 | 153800824 | tier1 | CDS-5UTR | 1517 | NA | 0.37119 |
| BRCA | TCGA-AN-A0XV-01A | TCGA-AN-A0XV | ASH1L|GPATCH4 | ASH1L | GPATCH4 | 1 | 1 | -1 | -1 | 2 | 1 | 1 | 0.24 | 155317447 | 156568896 | tier3 | CDS-5UTR | 1520 | NA | 0.36086 |
| CESC | TCGA-EA-A5O9-01A | TCGA-EA-A5O9 | ASH1L|RGS7 | ASH1L | RGS7 | 1 | 1 | -1 | -1 | 21 | 2 | 2 | 0.087 | 155447677 | 240979715 | tier1 | Out-of-frame | 1525 | NA | 0.37842 |
| DLBC | TCGA-FF-8043-01A | TCGA-FF-8043 | ASH1L|ZNF687 | ASH1L | ZNF687 | 1 | 1 | -1 | 1 | 12 | 14 | 13 | 0.015 | 155531944 | 151263191 | tier1 | 5UTR-CDS | 1531 | validated | 0.36226 |
| LUSC | TCGA-L3-A524-01A | TCGA-L3-A524 | ASH1L|GON4L | ASH1L | GON4L | 1 | 1 | -1 | -1 | 9 | 4 | 3 | 0.27 | 155531944 | 155786053 | tier2 | 5UTR-CDS | 1519 | NA | 0.36551 |
| OV | TCGA-24-1553-01A | TCGA-24-1553 | ASH1L|C1orf87 | ASH1L | C1orf87 | 1 | 1 | -1 | -1 | 2 | 2 | 2 | 0.86 | 155349834 | 60521110 | tier2 | Out-of-frame | 1515 | NA | 0 |
| PRAD | TCGA-EJ-5518-01A | TCGA-EJ-5518 | ASH1L|NSL1 | ASH1L | NSL1 | 1 | 1 | -1 | -1 | 11 | 4 | 4 | 3.4 | 155490891 | 212960979 | tier1 | In-frame | 1523 | NA | 0.36662 |
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