TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
HNSC	TCGA-CQ-A4CH-01A	TCGA-CQ-A4CH	CHST10\|MAP4K4	CHST10	MAP4K4	2	2	-1	1	56	45	41	0.13	101019026	102440390	tier1	In-frame	3707	NA	0.38008
KIRP	TCGA-G7-6792-01A	TCGA-G7-6792	KDM3A\|CRIM1	KDM3A	CRIM1	2	2	1	1	43	26	23	0.3	86691339	36691677	tier1	In-frame	8653	NA	0.34546
BRCA	TCGA-BH-A0B3-01A	TCGA-BH-A0B3	KDM3A\|RFX8	KDM3A	RFX8	2	2	1	-1	3	3	2	1.2	86694006	102083362	tier1	CDS-5UTR	8656	non-validated	0
LUAD	TCGA-44-4112-01A	TCGA-44-4112	KDM3A\|MRPL35	KDM3A	MRPL35	2	2	1	1	5	2	2	0.054	86669356	86433229	tier1	Out-of-frame	8654	non-validated	0.32409
LUSC	TCGA-60-2715-01A	TCGA-60-2715	KDM3A\|PUS10	KDM3A	PUS10	2	2	1	-1	6	3	3	1.4	86718398	61239040	tier1	CDS-5UTR	8655	NA	0.33004
BRCA	TCGA-E2-A1LE-01A	TCGA-E2-A1LE	PLCD4\|VIL1	PLCD4	VIL1	2	2	1	1	2	8	7	0.22	219487601	219313946	tier2	Out-of-frame	12966	NA	0.37416
KIRC	TCGA-CZ-4857-01A	TCGA-CZ-4857	IL1R1\|MAP4K4	IL1R1	MAP4K4	2	2	1	1	8	5	5	0.23	102721332	102499013	tier1	5UTR-CDS	8169	NA	0.38101
BRCA	TCGA-BH-A203-01A	TCGA-BH-A203	IL1R1\|IL1R2	IL1R1	IL1R2	2	2	1	1	5	6	4	1	102782741	102626024	tier1	In-frame	8167	NA	0.36387
LIHC	TCGA-PD-A5DF-01A	TCGA-PD-A5DF	IL1R1\|IL1R2	IL1R1	IL1R2	2	2	1	1	2	3	2	1	102770477	102632333	tier4	5UTR-CDS	8168	non-validated	0.36387
LUAD	TCGA-93-A4JO-01A	TCGA-93-A4JO	IL1R1\|IL1R2	IL1R1	IL1R2	2	2	1	1	2	18	7	1	102796334	102638649	tier4	3UTR-CDS	8166	NA	0.36387
BRCA	TCGA-BH-A1FD-01A	TCGA-BH-A1FD	IL1RL2\|IL1R2	IL1RL2	IL1R2	2	2	1	1	4	1	1	0.51	102828634	102636100	tier2	Out-of-frame	8178	NA	0.35767
HNSC	TCGA-CV-7406-01A	TCGA-CV-7406	IL18R1\|MCOLN2	IL18R1	MCOLN2	2	1	1	-1	4	1	1	0.39	102972860	85406674	tier3	5UTR-CDS	8165	NA	0.35958
SKCM	TCGA-ER-A197-06A	TCGA-ER-A197	SLC9A2\|C2orf55	SLC9A2	C2orf55	2	2	1	-1	3	1	1	0.75	103236596	99414000	tier2	In-frame	16297	NA	0
STAD	TCGA-CG-4443-01A	TCGA-CG-4443	STK16\|PLCD4	STK16	PLCD4	2	2	1	1	25	33	33	0.027	220112479	219496859	tier1	In-frame	17055	validated	0
LUAD	TCGA-55-6985-01A	TCGA-55-6985	PASK\|BOK	PASK	BOK	2	2	-1	1	2	2	2	0.14	242079936	242509540	tier4	Out-of-frame	12315	NA	0.35997
LUAD	TCGA-64-1676-01A	TCGA-64-1676	PRKD3\|AC016722.2	PRKD3	AC016722.2	2	2	-1	1	14	24	22	1.1	37551824	47083062	tier1	NA	13565	NA	0.365
SARC	TCGA-K1-A3PO-01A	TCGA-K1-A3PO	PRKD3\|TMEM51	PRKD3	TMEM51	2	1	-1	1	11	6	6	0.43	37520276	15536986	tier1	CDS-5UTR	13566	NA	0.36948
CESC	TCGA-IR-A3LC-01A	TCGA-IR-A3LC	SDC1\|PLAT	SDC1	PLAT	2	8	-1	-1	2	25	23	0.091	20400560	42051245	tier3	NA	15460	NA	0
STAD	TCGA-HF-A5NB-01A	TCGA-HF-A5NB	SDC1\|PUM2	SDC1	PUM2	2	2	-1	-1	3	46	46	2.5	20402848	20463221	tier1	In-frame	15461	NA	0
LIHC	TCGA-DD-A3A5-01A	TCGA-DD-A3A5	AAK1\|RPIA	AAK1	RPIA	2	2	-1	1	6	1	1	0.007	69783992	89028796	tier2	In-frame	12	NA	0.36301

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