TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
LUSC	TCGA-22-1005-01A	TCGA-22-1005	ITGB6\|RBMS1	ITGB6	RBMS1	2	2	-1	-1	11	14	13	0.71	161055690	161141555	tier1	In-frame	8410	NA	0.37156
SARC	TCGA-DX-A6BG-01A	TCGA-DX-A6BG	ITGB6\|CNOT2	ITGB6	CNOT2	2	12	-1	1	9	7	7	0.79	160964190	70731169	tier1	Out-of-frame	8409	NA	0.36646
LGG	TCGA-HT-7477-01B	TCGA-HT-7477	ITGA4\|UBE2E2	ITGA4	UBE2E2	2	3	1	1	5	9	9	0.41	182323044	23541099	tier1	Out-of-frame	8380	NA	0.37773
KIRC	TCGA-BP-5006-01A	TCGA-BP-5006	PDE1A\|PPP1R1C	PDE1A	PPP1R1C	2	2	-1	1	20	9	8	0.52	183291305	182926169	tier1	Out-of-frame	12465	NA	0.35021
LUSC	TCGA-66-2756-01A	TCGA-66-2756	RTN4\|MITD1	RTN4	MITD1	2	2	-1	-1	21	19	17	2	55276881	99790479	tier1	In-frame	15170	non-validated	0
UCEC	TCGA-EO-A3AS-01A	TCGA-EO-A3AS	LOXL3\|C2orf65	LOXL3	C2orf65	2	2	-1	-1	3	2	2	0.32	74777312	74786001	tier1	In-frame	9434	NA	0
PAAD	TCGA-F2-A44H-01A	TCGA-F2-A44H	REG1A\|PLEKHB2	REG1A	PLEKHB2	2	2	1	1	2	5	5	0.43	79350545	131876464	tier3	3UTR-5UTR	14534	NA	0
BRCA	TCGA-A8-A097-01A	TCGA-A8-A097	FN1\|EIF2AK2	FN1	EIF2AK2	2	2	-1	-1	2	3	2	0.92	216225163	37342384	tier4	NA	6591	NA	0.39015
THCA	TCGA-EL-A3ZK-01A	TCGA-EL-A3ZK	FN1\|ATP2B4	FN1	ATP2B4	2	1	-1	1	2	3	1	0.23	216225177	203671172	tier4	3UTR-CDS	6590	NA	0.38175
LUSC	TCGA-37-4130-01A	TCGA-37-4130	FN1\|PECR	FN1	PECR	2	2	-1	-1	46	40	39	2	216242898	216931241	tier1	In-frame	6592	NA	0.37139
BLCA	TCGA-BT-A20O-01A	TCGA-BT-A20O	FN1\|ZNFX1	FN1	ZNFX1	2	20	-1	-1	2	1	1	0.67	216225181	47863418	tier4	3UTR-CDS	6595	NA	0.37095
KIRC	TCGA-BP-5196-01A	TCGA-BP-5196	FN1\|WDSUB1	FN1	WDSUB1	2	2	-1	-1	355	289	266	2.1	216298047	160105023	tier1	In-frame	6594	NA	0.37195
LUSC	TCGA-85-7950-01A	TCGA-85-7950	FN1\|UTRN	FN1	UTRN	2	6	-1	1	2	2	2	0.32	216225181	144665237	tier3	NA	6593	NA	0.37814
THCA	TCGA-DJ-A3V0-01A	TCGA-DJ-A3V0	FN1\|ARFGEF2	FN1	ARFGEF2	2	20	-1	1	2	14	10	0.81	216225181	47615777	tier3	3UTR-CDS	6589	NA	0.3749
SARC	TCGA-DX-A8BG-01A	TCGA-DX-A8BG	STAT1\|SUMO1	STAT1	SUMO1	2	2	-1	-1	42	301	288	2.9	191839556	203075529	tier1	In-frame	17013	NA	0
UCS	TCGA-N6-A4V9-01A	TCGA-N6-A4V9	IGFBP2\|CLCN3	IGFBP2	CLCN3	2	4	1	1	2	1	1	0.028	217529159	170623929	tier3	NA	8116	NA	0.36698
KIRC	TCGA-A3-3317-01A	TCGA-A3-3317	IGFBP5\|TYK2	IGFBP5	TYK2	2	19	-1	-1	2	5	5	0.079	217536828	10491352	tier3	3UTR-5UTR	8122	NA	0.37838
THCA	TCGA-EL-A3MW-01A	TCGA-EL-A3MW	IGFBP5\|SIAE	IGFBP5	SIAE	2	11	-1	-1	2	16	14	0.35	217536828	124543777	tier3	3UTR-5UTR	8121	NA	0.35786
BRCA	TCGA-A8-A079-01A	TCGA-A8-A079	IGFBP5\|CXCR5	IGFBP5	CXCR5	2	11	-1	1	2	1	1	0.28	217536828	118754475	tier3	3UTR-5UTR	8120	NA	0.36394
THCA	TCGA-FK-A3SH-01A	TCGA-FK-A3SH	IGFBP5\|ARHGEF4	IGFBP5	ARHGEF4	2	2	-1	1	2	58	1	0.087	217536828	131674224	tier3	3UTR-5UTR	8119	NA	0.37596

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