TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
LUSC	TCGA-56-7223-01A	TCGA-56-7223	KLHL24\|MCF2L2	KLHL24	MCF2L2	3	3	1	-1	50	60	55	0.016	183361330	182948805	tier1	5UTR-CDS	9067	NA	0.35388
SARC	TCGA-IE-A3OV-01A	TCGA-IE-A3OV	KLHL24\|MARCH7	KLHL24	MARCH7	3	2	1	1	43	13	12	0.042	183369064	160619391	tier1	Out-of-frame	9066	NA	0
BLCA	TCGA-DK-A6B2-01A	TCGA-DK-A6B2	PLCH1\|MUC13	PLCH1	MUC13	3	3	-1	-1	2	3	3	2.3	155282704	124625589	tier3	CDS-3UTR	12973	NA	0.35634
BRCA	TCGA-BH-A1F0-01A	TCGA-BH-A1F0	PLCH1\|SKIL	PLCH1	SKIL	3	3	-1	1	2	4	4	0.28	155421935	170077487	tier4	5UTR-5UTR	12974	NA	0.36659
LUAD	TCGA-55-8506-01A	TCGA-55-8506	PLCH1\|C3orf33	PLCH1	C3orf33	3	3	-1	-1	5	10	9	0.44	155462629	155520380	tier1	5UTR-CDS	12972	NA	0
BLCA	TCGA-DK-A1AF-01A	TCGA-DK-A1AF	NEK4\|SETD2	NEK4	SETD2	3	3	-1	-1	6	5	5	1.1	52771602	47108608	tier1	In-frame	11356	NA	0.3694
ACC	TCGA-PK-A5HA-01A	TCGA-PK-A5HA	NEK4\|TMEM110	NEK4	TMEM110	3	3	-1	-1	2	1	1	0.18	52797486	52889460	tier2	Out-of-frame	11357	NA	0.35057
HNSC	TCGA-CR-7397-01A	TCGA-CR-7397	ADAM23\|PPAP2A	ADAM23	PPAP2A	2	5	1	-1	2	3	3	1.3	207432046	54721162	tier3	In-frame	416	NA	0.35997
LUSC	TCGA-33-4538-01A	TCGA-33-4538	ADAM23\|CERKL	ADAM23	CERKL	2	2	1	-1	32	14	14	0.72	207424842	182468806	tier1	Out-of-frame	415	NA	0.3482
LGG	TCGA-FG-5963-02A	TCGA-FG-5963	GPD2\|R3HDM1	GPD2	R3HDM1	2	2	1	1	7	1	1	3.4	157293025	136360070	tier2	5UTR-5UTR	7336	NA	0.3552
OV	TCGA-24-2281-01A	TCGA-24-2281	ACVR1\|NFATC1	ACVR1	NFATC1	2	18	-1	1	6	44	42	1.9	158674897	77246248	tier1	5UTR-CDS	393	NA	0.38243
LUAD	TCGA-44-7660-01A	TCGA-44-7660	ACVR1\|CCDC148	ACVR1	CCDC148	2	2	-1	-1	5	11	6	0.34	158674897	159035508	tier1	5UTR-CDS	391	NA	0.37698
UCEC	TCGA-5B-A90C-01A	TCGA-5B-A90C	ACVR1\|CCDC148	ACVR1	CCDC148	2	2	-1	-1	2	3	2	0.34	158655939	159145348	tier4	Out-of-frame	392	NA	0.37698
LGG	TCGA-QH-A6XC-01A	TCGA-QH-A6XC	NRBP1\|DROSHA	NRBP1	DROSHA	2	5	1	-1	70	91	82	0.045	27651598	31410994	tier1	5UTR-CDS	11734	NA	0.3599
BLCA	TCGA-BT-A20W-01A	TCGA-BT-A20W	ITGB6\|RBMS1	ITGB6	RBMS1	2	2	-1	-1	2	4	4	0.71	161051880	161174738	tier3	In-frame	8411	NA	0.37156
BLCA	TCGA-DK-A2I6-01A	TCGA-DK-A2I6	ITGB6\|RBMS1	ITGB6	RBMS1	2	2	-1	-1	8	26	21	0.71	160964190	161141555	tier1	In-frame	8414	NA	0.37156
BLCA	TCGA-ZF-A9R1-01A	TCGA-ZF-A9R1	ITGB6\|RBMS1	ITGB6	RBMS1	2	2	-1	-1	3	11	10	0.71	160998493	161143595	tier1	Out-of-frame	8415	NA	0.37156
BLCA	TCGA-ZF-AA51-01A	TCGA-ZF-AA51	ITGB6\|RBMS1	ITGB6	RBMS1	2	2	-1	-1	2	15	13	0.71	161025723	161133894	tier2	In-frame	8416	NA	0.37156
BRCA	TCGA-D8-A1XK-01A	TCGA-D8-A1XK	ITGB6\|RBMS1	ITGB6	RBMS1	2	2	-1	-1	10	96	87	0.71	161030485	161159998	tier1	In-frame	8413	NA	0.37156
HNSC	TCGA-D6-8568-01A	TCGA-D6-8568	ITGB6\|RBMS1	ITGB6	RBMS1	2	2	-1	-1	2	5	4	0.71	161051880	161174738	tier3	In-frame	8412	NA	0.37156

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