Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUSC | TCGA-85-8580-01A | TCGA-85-8580 | FXR1|MCCC1 | FXR1 | MCCC1 | 3 | 3 | 1 | -1 | 35 | 114 | 91 | 3.9 | 180630524 | 182790275 | tier1 | In-frame | 6839 | NA | 0.36378 |
| LUSC | TCGA-43-2578-01A | TCGA-43-2578 | GBE1|ZNF385D | GBE1 | ZNF385D | 3 | 3 | -1 | -1 | 50 | 38 | 38 | 0.55 | 81627076 | 21478695 | tier1 | In-frame | 6999 | NA | 0.3402 |
| UCS | TCGA-N5-A4RO-01A | TCGA-N5-A4RO | GBE1|ZNF569 | GBE1 | ZNF569 | 3 | 19 | -1 | -1 | 4 | 1 | 1 | 0.5 | 81754595 | 37935866 | tier2 | CDS-5UTR | 7000 | NA | 0.35506 |
| LGG | TCGA-DU-7006-01A | TCGA-DU-7006 | UMPS|KALRN | UMPS | KALRN | 3 | 3 | 1 | 1 | 4 | 2 | 2 | 3.6 | 124449474 | 124369655 | tier1 | In-frame | 19236 | NA | 0 |
| LIHC | TCGA-XR-A8TG-01A | TCGA-XR-A8TG | UMPS|KALRN | UMPS | KALRN | 3 | 3 | 1 | 1 | 14 | 5 | 5 | 3.6 | 124449474 | 124281690 | tier1 | In-frame | 19237 | NA | 0 |
| LGG | TCGA-S9-A7J0-01A | TCGA-S9-A7J0 | UMPS|ERC2 | UMPS | ERC2 | 3 | 3 | 1 | -1 | 2 | 3 | 3 | 0.048 | 124457086 | 56053059 | tier3 | Out-of-frame | 19235 | NA | 0 |
| PRAD | TCGA-V1-A8MM-01A | TCGA-V1-A8MM | SLC41A3|ALDH1L1 | SLC41A3 | ALDH1L1 | 3 | 3 | -1 | -1 | 3 | 2 | 2 | 0.078 | 125786790 | 125879845 | tier1 | Out-of-frame | 16225 | NA | 0 |
| BRCA | TCGA-A8-A06U-01A | TCGA-A8-A06U | ATP6V1A|OPA1 | ATP6V1A | OPA1 | 3 | 3 | 1 | 1 | 20 | 18 | 17 | 0.3 | 113465960 | 193349401 | tier1 | 5UTR-CDS | 1754 | NA | 0.3462 |
| MESO | TCGA-ZN-A9VW-01A | TCGA-ZN-A9VW | KLHL18|NUP210 | KLHL18 | NUP210 | 3 | 3 | 1 | -1 | 3 | 1 | 1 | 1.2 | 47324584 | 13441361 | tier2 | Out-of-frame | 9058 | NA | 0.36941 |
| BLCA | TCGA-DK-A3IQ-01A | TCGA-DK-A3IQ | KLHL18|HEMK1 | KLHL18 | HEMK1 | 3 | 3 | 1 | 1 | 5 | 3 | 2 | 0.29 | 47324584 | 50608362 | tier1 | CDS-5UTR | 9057 | NA | 0.35548 |
| BRCA | TCGA-A2-A3KC-01A | TCGA-A2-A3KC | KLHL18|TEX264 | KLHL18 | TEX264 | 3 | 3 | 1 | 1 | 15 | 10 | 8 | 0.11 | 47324584 | 51708287 | tier1 | CDS-5UTR | 9059 | validated | 0.35704 |
| BRCA | TCGA-D8-A140-01A | TCGA-D8-A140 | NEK11|ATP2C1 | NEK11 | ATP2C1 | 3 | 3 | 1 | 1 | 8 | 7 | 6 | 0.15 | 130852800 | 130649260 | tier1 | Out-of-frame | 11352 | NA | 0.35802 |
| LGG | TCGA-HT-A5RA-01A | TCGA-HT-A5RA | NEK11|BDH1 | NEK11 | BDH1 | 3 | 3 | 1 | -1 | 27 | 12 | 11 | 0.37 | 130889731 | 197241287 | tier1 | In-frame | 11353 | NA | 0.35837 |
| LUSC | TCGA-56-8622-01A | TCGA-56-8622 | NEK11|FAM150A | NEK11 | FAM150A | 3 | 8 | 1 | -1 | 5 | 2 | 2 | 1.5 | 130852800 | 53455005 | tier1 | Out-of-frame | 11354 | NA | 0.35913 |
| UCS | TCGA-N6-A4VE-01A | TCGA-N6-A4VE | MAPKAPK3|S1PR5 | MAPKAPK3 | S1PR5 | 3 | 19 | 1 | -1 | 20 | 8 | 7 | 0.26 | 50655215 | 10625705 | tier1 | CDS-5UTR | 9966 | NA | 0.38332 |
| LIHC | TCGA-2Y-A9H0-01A | TCGA-2Y-A9H0 | MAPKAPK3|HEMK1 | MAPKAPK3 | HEMK1 | 3 | 3 | 1 | 1 | 8 | 5 | 5 | 0.19 | 50655215 | 50609141 | tier1 | In-frame | 9965 | NA | 0.37775 |
| LUAD | TCGA-05-4405-01A | TCGA-05-4405 | MAPKAPK3|HEMK1 | MAPKAPK3 | HEMK1 | 3 | 3 | 1 | 1 | 3 | 2 | 1 | 0.19 | 50655215 | 50609141 | tier4 | In-frame | 9964 | NA | 0.37775 |
| SKCM | TCGA-FS-A1ZQ-06A | TCGA-FS-A1ZQ | ABCC5|SPRR4 | ABCC5 | SPRR4 | 3 | 1 | -1 | 1 | 10 | 5 | 5 | 100 | 183645118 | 152944347 | tier1 | CDS-5UTR | 69 | NA | 0.34452 |
| KIRP | TCGA-G7-6793-01A | TCGA-G7-6793 | KLHL24|ATP11B | KLHL24 | ATP11B | 3 | 3 | 1 | 1 | 67 | 39 | 34 | 1 | 183390272 | 182631649 | tier1 | In-frame | 9064 | NA | 0.35313 |
| LUSC | TCGA-21-1071-01A | TCGA-21-1071 | KLHL24|CEP89 | KLHL24 | CEP89 | 3 | 19 | 1 | -1 | 9 | 9 | 9 | 0.1 | 183381430 | 33392318 | tier1 | Out-of-frame | 9065 | NA | 0.34575 |
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