Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| STAD | TCGA-HU-A4GP-01A | TCGA-HU-A4GP | CSNK1A1|SCGB3A2 | CSNK1A1 | SCGB3A2 | 5 | 5 | -1 | 1 | 5 | 210 | 198 | 0.38 | 148929638 | 147261009 | tier1 | Out-of-frame | 4278 | NA | 0.37857 |
| HNSC | TCGA-BB-A5HZ-01A | TCGA-BB-A5HZ | CSNK1A1|ARHGEF37 | CSNK1A1 | ARHGEF37 | 5 | 5 | -1 | 1 | 5 | 6 | 4 | 1.1 | 148929638 | 148977322 | tier1 | CDS-5UTR | 4277 | NA | 0.37754 |
| LUAD | TCGA-78-7149-01A | TCGA-78-7149 | PDGFRB|FAR1 | PDGFRB | FAR1 | 5 | 11 | -1 | 1 | 2 | 10 | 8 | 0.34 | 149493405 | 13744912 | tier4 | NA | 12529 | NA | 0.38501 |
| ESCA | TCGA-L5-A8NE-01A | TCGA-L5-A8NE | ATP6V0E1|ERGIC1 | ATP6V0E1 | ERGIC1 | 5 | 5 | 1 | 1 | 10 | 151 | 138 | 0.7 | 172410967 | 172315702 | tier1 | In-frame | 1753 | non-validated | 0.34058 |
| BRCA | TCGA-A8-A08P-01A | TCGA-A8-A08P | PCCB|DLG1 | PCCB | DLG1 | 3 | 3 | 1 | -1 | 14 | 15 | 15 | 0.026 | 136048826 | 196921460 | tier1 | In-frame | 12385 | NA | 0.37813 |
| LUSC | TCGA-85-6175-01A | TCGA-85-6175 | SLC25A36|PEX5L | SLC25A36 | PEX5L | 3 | 3 | 1 | -1 | 22 | 11 | 10 | 1.5 | 140660937 | 179533792 | tier1 | Out-of-frame | 16112 | NA | 0 |
| SKCM | TCGA-EE-A3J7-06A | TCGA-EE-A3J7 | SLC25A36|CLSTN2 | SLC25A36 | CLSTN2 | 3 | 3 | 1 | 1 | 56 | 44 | 41 | 2.8 | 140682069 | 139894793 | tier1 | In-frame | 16111 | NA | 0 |
| CESC | TCGA-HM-A4S6-01A | TCGA-HM-A4S6 | COL7A1|ANXA1 | COL7A1 | ANXA1 | 3 | 9 | -1 | 1 | 2 | 21 | 17 | 0.06 | 48601506 | 75772570 | tier3 | 3UTR-5UTR | 4046 | NA | 0.37993 |
| ESCA | TCGA-L5-A8NI-01A | TCGA-L5-A8NI | COL7A1|SLC26A6 | COL7A1 | SLC26A6 | 3 | 3 | -1 | -1 | 2 | 6 | 6 | 0.074 | 48630003 | 48665471 | tier2 | Out-of-frame | 4047 | NA | 0.36887 |
| PRAD | TCGA-2A-A8VV-01A | TCGA-2A-A8VV | PRKAR2A|CACNA1D | PRKAR2A | CACNA1D | 3 | 3 | -1 | 1 | 3 | 3 | 3 | 0.51 | 48845082 | 53769401 | tier1 | Out-of-frame | 13533 | NA | 0.37846 |
| THYM | TCGA-ZB-A96L-01A | TCGA-ZB-A96L | PRKAR2A|CACNA2D3 | PRKAR2A | CACNA2D3 | 3 | 3 | -1 | 1 | 11 | 6 | 6 | 0.24 | 48884768 | 54537519 | tier1 | Out-of-frame | 13534 | NA | 0.37579 |
| ACC | TCGA-OR-A5JZ-01A | TCGA-OR-A5JZ | PRKAR2A|SLC25A20 | PRKAR2A | SLC25A20 | 3 | 3 | -1 | -1 | 8 | 5 | 4 | 1.5 | 48845082 | 48929505 | tier1 | Out-of-frame | 13536 | NA | 0.37613 |
| BRCA | TCGA-B6-A3ZX-01A | TCGA-B6-A3ZX | PRKAR2A|SLC25A20 | PRKAR2A | SLC25A20 | 3 | 3 | -1 | -1 | 2 | 1 | 1 | 1.5 | 48884768 | 48929505 | tier3 | Out-of-frame | 13535 | NA | 0.37613 |
| LGG | TCGA-HT-A619-01A | TCGA-HT-A619 | USP4|BBOX1 | USP4 | BBOX1 | 3 | 11 | -1 | 1 | 17 | 5 | 5 | 2.6 | 49329943 | 27078748 | tier1 | Out-of-frame | 19385 | NA | 0 |
| BLCA | TCGA-ZF-AA4N-01A | TCGA-ZF-AA4N | USP4|CCDC13 | USP4 | CCDC13 | 3 | 3 | -1 | -1 | 4 | 6 | 6 | 1.2 | 49348053 | 42799843 | tier1 | CDS-5UTR | 19386 | NA | 0 |
| BLCA | TCGA-E7-A7PW-01A | TCGA-E7-A7PW | USP4|RHOA | USP4 | RHOA | 3 | 3 | -1 | -1 | 12 | 17 | 14 | 0.81 | 49377357 | 49405981 | tier1 | Out-of-frame | 19387 | NA | 0 |
| COAD | TCGA-D5-6534-01A | TCGA-D5-6534 | USP4|SCRIB | USP4 | SCRIB | 3 | 8 | -1 | -1 | 5 | 2 | 2 | 0.6 | 49362135 | 144877700 | tier1 | Out-of-frame | 19388 | NA | 0 |
| LUSC | TCGA-63-A5MV-01A | TCGA-63-A5MV | FXR1|FGF10 | FXR1 | FGF10 | 3 | 5 | 1 | -1 | 14 | 31 | 27 | 3.1 | 180630524 | 44389158 | tier1 | NA | 6838 | NA | 0.36659 |
| CESC | TCGA-C5-A1ML-01A | TCGA-C5-A1ML | FXR1|NAALADL2 | FXR1 | NAALADL2 | 3 | 3 | 1 | 1 | 20 | 16 | 12 | 0.17 | 180653019 | 175165017 | tier1 | Out-of-frame | 6840 | validated | 0.35921 |
| BRCA | TCGA-C8-A135-01A | TCGA-C8-A135 | FXR1|RIMS2 | FXR1 | RIMS2 | 3 | 8 | 1 | 1 | 2 | 12 | 10 | 0.93 | 180651174 | 105080740 | tier3 | Out-of-frame | 6841 | NA | 0.36655 |
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