Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-KD-A5QU-01A | TCGA-KD-A5QU | PDE4D|C4orf14 | PDE4D | C4orf14 | 5 | 4 | -1 | -1 | 6 | 4 | 4 | 3.5 | 58476421 | 57840188 | tier1 | In-frame | 12475 | NA | 0 |
| STAD | TCGA-VQ-A92D-01A | TCGA-VQ-A92D | PDE4D|ERCC8 | PDE4D | ERCC8 | 5 | 5 | -1 | -1 | 2 | 10 | 10 | 0.054 | 58511603 | 60170510 | tier2 | Out-of-frame | 12492 | NA | 0.37597 |
| BRCA | TCGA-A2-A04U-01A | TCGA-A2-A04U | PRLR|KDM3B | PRLR | KDM3B | 5 | 5 | -1 | 1 | 3 | 1 | 1 | 0.82 | 35230370 | 137708363 | tier2 | 5UTR-CDS | 13580 | NA | 0.37066 |
| ACC | TCGA-OR-A5KX-01A | TCGA-OR-A5KX | PRLR|CDH12 | PRLR | CDH12 | 5 | 5 | -1 | -1 | 6 | 9 | 9 | 0.14 | 35118163 | 22505473 | tier1 | 5UTR-5UTR | 13578 | NA | 0.37381 |
| ACC | TCGA-OR-A5J1-01A | TCGA-OR-A5J1 | PRLR|CLPTM1L | PRLR | CLPTM1L | 5 | 5 | -1 | -1 | 88 | 44 | 43 | 0.3 | 35230370 | 1318568 | tier1 | 5UTR-CDS | 13579 | NA | 0.3754 |
| BRCA | TCGA-D8-A13Z-01A | TCGA-D8-A13Z | PRLR|PLCXD3 | PRLR | PLCXD3 | 5 | 5 | -1 | -1 | 42 | 21 | 21 | 0.26 | 35230370 | 41382636 | tier1 | 5UTR-CDS | 13581 | NA | 0.37332 |
| LIHC | TCGA-BC-A3KG-01A | TCGA-BC-A3KG | SLC12A7|TERT | SLC12A7 | TERT | 5 | 5 | -1 | -1 | 5 | 4 | 3 | 0.76 | 1111983 | 1282739 | tier1 | In-frame | 16015 | NA | 0 |
| LIHC | TCGA-ZS-A9CF-01A | TCGA-ZS-A9CF | SLC12A7|TERT | SLC12A7 | TERT | 5 | 5 | -1 | -1 | 12 | 9 | 8 | 0.76 | 1111983 | 1282739 | tier1 | In-frame | 16018 | NA | 0 |
| STAD | TCGA-BR-4357-01A | TCGA-BR-4357 | SLC12A7|TERT | SLC12A7 | TERT | 5 | 5 | -1 | -1 | 238 | 230 | 201 | 0.76 | 1074682 | 1266650 | tier1 | In-frame | 16016 | NA | 0 |
| UCEC | TCGA-E6-A8L9-01A | TCGA-E6-A8L9 | SLC12A7|TERT | SLC12A7 | TERT | 5 | 5 | -1 | -1 | 4 | 3 | 1 | 0.76 | 1060459 | 1282739 | tier2 | Out-of-frame | 16017 | NA | 0 |
| LIHC | TCGA-BC-A10R-01A | TCGA-BC-A10R | SLC12A7|CLPTM1L | SLC12A7 | CLPTM1L | 5 | 5 | -1 | -1 | 6 | 5 | 4 | 0.47 | 1073748 | 1331998 | tier1 | In-frame | 16012 | NA | 0 |
| LIHC | TCGA-2Y-A9H0-01A | TCGA-2Y-A9H0 | SLC12A7|SKIV2L2 | SLC12A7 | SKIV2L2 | 5 | 5 | -1 | 1 | 168 | 224 | 126 | 0.79 | 1057586 | 54720548 | tier1 | Out-of-frame | 16014 | NA | 0 |
| LUAD | TCGA-95-A4VK-01A | TCGA-95-A4VK | SLC12A7|RASGEF1C | SLC12A7 | RASGEF1C | 5 | 5 | -1 | -1 | 24 | 29 | 28 | 0.13 | 1111983 | 179565058 | tier2 | CDS-5UTR | 16013 | NA | 0 |
| LUAD | TCGA-55-6982-01A | TCGA-55-6982 | SLC12A7|TMEM117 | SLC12A7 | TMEM117 | 5 | 12 | -1 | 1 | 17 | 11 | 10 | 0.003 | 1094269 | 44693363 | tier1 | Out-of-frame | 16019 | non-validated | 0 |
| GBM | TCGA-27-1831-01A | TCGA-27-1831 | NR3C1|HMHB1 | NR3C1 | HMHB1 | 5 | 5 | -1 | 1 | 5 | 8 | 6 | 0.008 | 142693567 | 143200045 | tier1 | NA | 11724 | non-validated | 0.38241 |
| BRCA | TCGA-A7-A26G-01A | TCGA-A7-A26G | LIFR|C9 | LIFR | C9 | 5 | 5 | -1 | -1 | 9 | 13 | 12 | 0.023 | 38493708 | 39316131 | tier1 | Out-of-frame | 9328 | non-validated | 0.37484 |
| LGG | TCGA-DU-7006-01A | TCGA-DU-7006 | LIFR|PNPLA8 | LIFR | PNPLA8 | 5 | 7 | -1 | -1 | 2 | 8 | 7 | 0.44 | 38556436 | 108161965 | tier4 | 5UTR-5UTR | 9329 | NA | 0.37478 |
| LUSC | TCGA-68-8250-01A | TCGA-68-8250 | LIFR|BCAS3 | LIFR | BCAS3 | 5 | 17 | -1 | 1 | 65 | 52 | 50 | 0.11 | 38496484 | 59445688 | tier1 | In-frame | 9327 | non-validated | 0.37322 |
| GBM | TCGA-06-5415-01A | TCGA-06-5415 | TXNDC15|ARPC2 | TXNDC15 | ARPC2 | 5 | 2 | 1 | 1 | 22 | 77 | 66 | 0.72 | 134210220 | 219103387 | tier1 | In-frame | 18984 | non-validated | 0 |
| HNSC | TCGA-F7-A61V-01A | TCGA-F7-A61V | TXNDC15|ODZ2 | TXNDC15 | ODZ2 | 5 | 5 | 1 | 1 | 4 | 1 | 1 | 1.2 | 134210220 | 167379593 | tier2 | In-frame | 18985 | NA | 0 |
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