Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-73-4666-01A | TCGA-73-4666 | PDE4D|RP11-325I22.2 | PDE4D | RP11-325I22.2 | 5 | 5 | -1 | -1 | 10 | 22 | 20 | 1.6 | 59481384 | 1364806 | tier1 | CDS-5UTR | 12505 | non-validated | 0.36686 |
| LUSC | TCGA-39-5029-01A | TCGA-39-5029 | PDE4D|DEPDC1B | PDE4D | DEPDC1B | 5 | 5 | -1 | -1 | 33 | 15 | 15 | 0.06 | 59783769 | 59943360 | tier1 | 5UTR-CDS | 12477 | NA | 0.37119 |
| LUSC | TCGA-77-8143-01A | TCGA-77-8143 | PDE4D|DEPDC1B | PDE4D | DEPDC1B | 5 | 5 | -1 | -1 | 31 | 22 | 22 | 0.06 | 59783769 | 59943360 | tier1 | 5UTR-CDS | 12479 | NA | 0.37119 |
| LUSC | TCGA-63-A5MY-01A | TCGA-63-A5MY | PDE4D|KHDRBS3 | PDE4D | KHDRBS3 | 5 | 8 | -1 | 1 | 57 | 60 | 44 | 2 | 58476421 | 136533480 | tier1 | In-frame | 12497 | NA | 0.37372 |
| LUSC | TCGA-22-0940-01A | TCGA-22-0940 | PDE4D|MCTP1 | PDE4D | MCTP1 | 5 | 5 | -1 | -1 | 7 | 2 | 2 | 0.13 | 59064073 | 94353188 | tier1 | Out-of-frame | 12498 | NA | 0.37036 |
| LUSC | TCGA-77-7142-01A | TCGA-77-7142 | PDE4D|RAB3C | PDE4D | RAB3C | 5 | 5 | -1 | 1 | 36 | 15 | 14 | 0.005 | 59064073 | 58120865 | tier1 | In-frame | 12501 | NA | 0.37703 |
| LUSC | TCGA-66-2778-01A | TCGA-66-2778 | PDE4D|RGS7BP | PDE4D | RGS7BP | 5 | 5 | -1 | 1 | 2 | 1 | 1 | 0.35 | 59783769 | 63871601 | tier3 | 5UTR-CDS | 12503 | NA | 0.36854 |
| PRAD | TCGA-CH-5750-01A | TCGA-CH-5750 | PDE4D|DEPDC1B | PDE4D | DEPDC1B | 5 | 5 | -1 | -1 | 10 | 18 | 15 | 0.06 | 59481384 | 59983054 | tier1 | In-frame | 12480 | non-validated | 0.37119 |
| PRAD | TCGA-EJ-5521-01A | TCGA-EJ-5521 | PDE4D|DEPDC1B | PDE4D | DEPDC1B | 5 | 5 | -1 | -1 | 13 | 11 | 6 | 0.06 | 59481384 | 59943360 | tier1 | Out-of-frame | 12481 | NA | 0.37119 |
| PRAD | TCGA-KK-A8IM-01A | TCGA-KK-A8IM | PDE4D|DEPDC1B | PDE4D | DEPDC1B | 5 | 5 | -1 | -1 | 3 | 1 | 1 | 0.06 | 59481384 | 59983054 | tier3 | In-frame | 12482 | NA | 0.37119 |
| PRAD | TCGA-VN-A88O-01A | TCGA-VN-A88O | PDE4D|DEPDC1B | PDE4D | DEPDC1B | 5 | 5 | -1 | -1 | 15 | 18 | 18 | 0.06 | 59783769 | 59895087 | tier1 | 5UTR-CDS | 12484 | NA | 0.37119 |
| PRAD | TCGA-EJ-7785-01A | TCGA-EJ-7785 | PDE4D|ELOVL7 | PDE4D | ELOVL7 | 5 | 5 | -1 | -1 | 6 | 3 | 1 | 1.2 | 59284315 | 60095057 | tier4 | CDS-5UTR | 12487 | NA | 0.37063 |
| PRAD | TCGA-G9-6342-01A | TCGA-G9-6342 | PDE4D|ELOVL7 | PDE4D | ELOVL7 | 5 | 5 | -1 | -1 | 7 | 2 | 2 | 1.2 | 59481384 | 60083258 | tier1 | CDS-5UTR | 12488 | NA | 0.37063 |
| PRAD | TCGA-KC-A7FA-01A | TCGA-KC-A7FA | PDE4D|ELOVL7 | PDE4D | ELOVL7 | 5 | 5 | -1 | -1 | 2 | 2 | 2 | 1.2 | 59783769 | 60083258 | tier4 | 5UTR-5UTR | 12489 | NA | 0.37063 |
| PRAD | TCGA-V1-A9Z9-01A | TCGA-V1-A9Z9 | PDE4D|ELOVL7 | PDE4D | ELOVL7 | 5 | 5 | -1 | -1 | 3 | 4 | 4 | 1.2 | 59783769 | 60095057 | tier1 | 5UTR-5UTR | 12490 | NA | 0.37063 |
| PRAD | TCGA-ZG-A8QY-01A | TCGA-ZG-A8QY | PDE4D|ERCC8 | PDE4D | ERCC8 | 5 | 5 | -1 | -1 | 2 | 1 | 1 | 0.054 | 59481384 | 60200700 | tier2 | In-frame | 12493 | NA | 0.37597 |
| PRAD | TCGA-EJ-5497-01A | TCGA-EJ-5497 | PDE4D|FGF14 | PDE4D | FGF14 | 5 | 13 | -1 | -1 | 11 | 8 | 7 | 0.29 | 59783769 | 102379160 | tier1 | 5UTR-CDS | 12494 | NA | 0.36966 |
| PRAD | TCGA-J4-A83K-01A | TCGA-J4-A83K | PDE4D|INTS10 | PDE4D | INTS10 | 5 | 8 | -1 | 1 | 8 | 6 | 4 | 0.24 | 59284315 | 19677084 | tier4 | In-frame | 12496 | NA | 0.36743 |
| PRAD | TCGA-HC-7821-01A | TCGA-HC-7821 | PDE4D|PPAP2A | PDE4D | PPAP2A | 5 | 5 | -1 | -1 | 17 | 7 | 7 | 1.6 | 58476421 | 54737736 | tier1 | Out-of-frame | 12499 | NA | 0.37079 |
| PRAD | TCGA-TK-A8OK-01A | TCGA-TK-A8OK | PDE4D|RAB24 | PDE4D | RAB24 | 5 | 5 | -1 | -1 | 2 | 1 | 1 | 4.9 | 58882155 | 176730321 | tier2 | CDS-5UTR | 12500 | NA | 0.37415 |
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