Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-V1-A8MM-01A | TCGA-V1-A8MM | MAN2A1|DIRC1 | MAN2A1 | DIRC1 | 5 | 2 | 1 | -1 | 3 | 1 | 1 | 0.17 | 109125228 | 189599676 | tier3 | CDS-5UTR | 9814 | NA | 0.34509 |
| SARC | TCGA-DX-A3M1-01A | TCGA-DX-A3M1 | MAN2A1|TRIM9 | MAN2A1 | TRIM9 | 5 | 14 | 1 | -1 | 5 | 1 | 1 | 0.006 | 109026253 | 51492078 | tier3 | In-frame | 9817 | non-validated | 0.37285 |
| HNSC | TCGA-HD-A6HZ-01A | TCGA-HD-A6HZ | GHR|GPR68 | GHR | GPR68 | 5 | 14 | 1 | -1 | 3 | 1 | 1 | 5.7 | 42566046 | 91701523 | tier3 | CDS-5UTR | 7055 | NA | 0.37675 |
| LIHC | TCGA-DD-A3A5-01A | TCGA-DD-A3A5 | HMGCS1|SLC38A9 | HMGCS1 | SLC38A9 | 5 | 5 | -1 | -1 | 49 | 36 | 33 | 0.5 | 43292576 | 54965707 | tier1 | In-frame | 7869 | NA | 0.33746 |
| BLCA | TCGA-FD-A62P-01A | TCGA-FD-A62P | HMGCS1|UNC13A | HMGCS1 | UNC13A | 5 | 19 | -1 | -1 | 13 | 9 | 9 | 1.3 | 43292950 | 17756920 | tier1 | In-frame | 7870 | NA | 0.35559 |
| LGG | TCGA-E1-5304-01A | TCGA-E1-5304 | HMGCS1|OXCT1 | HMGCS1 | OXCT1 | 5 | 5 | -1 | -1 | 10 | 11 | 9 | 1.5 | 43307868 | 41862852 | tier1 | 5UTR-CDS | 7868 | NA | 0.33427 |
| LIHC | TCGA-2Y-A9H0-01A | TCGA-2Y-A9H0 | ARSB|DMGDH | ARSB | DMGDH | 5 | 5 | -1 | -1 | 15 | 13 | 11 | 2.1 | 78251118 | 78322404 | tier1 | In-frame | 1464 | NA | 0.33811 |
| SKCM | TCGA-D3-A8GN-06A | TCGA-D3-A8GN | LNPEP|FLT4 | LNPEP | FLT4 | 5 | 5 | 1 | -1 | 5 | 11 | 10 | 2.7 | 96271878 | 180048904 | tier1 | In-frame | 9414 | NA | 0.38841 |
| BRCA | TCGA-A2-A0D2-01A | TCGA-A2-A0D2 | LNPEP|CAST | LNPEP | CAST | 5 | 5 | 1 | 1 | 20 | 30 | 28 | 0.17 | 96271878 | 96011243 | tier1 | CDS-5UTR | 9413 | validated | 0.37288 |
| KICH | TCGA-KM-8443-01A | TCGA-KM-8443 | LNPEP|GPBP1 | LNPEP | GPBP1 | 5 | 5 | 1 | 1 | 31 | 54 | 47 | 0.047 | 96271878 | 56545281 | tier1 | Out-of-frame | 9415 | validated | 0.36855 |
| PRAD | TCGA-XK-AAJ3-01A | TCGA-XK-AAJ3 | LNPEP|PPIP5K2 | LNPEP | PPIP5K2 | 5 | 5 | 1 | 1 | 25 | 35 | 31 | 0.77 | 96322374 | 102537223 | tier1 | Out-of-frame | 9416 | NA | 0.36651 |
| SKCM | TCGA-EE-A2M7-06A | TCGA-EE-A2M7 | PDE4D|EFNA5 | PDE4D | EFNA5 | 5 | 5 | -1 | -1 | 8 | 3 | 1 | 0.45 | 58476421 | 106763210 | tier3 | Out-of-frame | 12485 | NA | 0.37514 |
| BRCA | TCGA-OL-A5D7-01A | TCGA-OL-A5D7 | PDE4D|DEPDC1B | PDE4D | DEPDC1B | 5 | 5 | -1 | -1 | 6 | 1 | 1 | 0.06 | 59783769 | 59983054 | tier2 | 5UTR-CDS | 12483 | NA | 0.37119 |
| BRCA | TCGA-HN-A2NL-01A | TCGA-HN-A2NL | PDE4D|ERCC8 | PDE4D | ERCC8 | 5 | 5 | -1 | -1 | 2 | 4 | 4 | 0.054 | 59783769 | 60198335 | tier2 | 5UTR-CDS | 12491 | NA | 0.37597 |
| KIRP | TCGA-P4-A5EB-01A | TCGA-P4-A5EB | PDE4D|FYB | PDE4D | FYB | 5 | 5 | -1 | -1 | 13 | 1 | 1 | 0.4 | 59481384 | 39124380 | tier4 | Out-of-frame | 12495 | NA | 0.37755 |
| KIRP | TCGA-P4-A5EB-01A | TCGA-P4-A5EB | PDE4D|RNF180 | PDE4D | RNF180 | 5 | 5 | -1 | 1 | 10 | 4 | 4 | 1.4 | 59064073 | 63665442 | tier1 | Out-of-frame | 12504 | NA | 0.37084 |
| LUAD | TCGA-86-7713-01A | TCGA-86-7713 | PDE4D|CRABP1 | PDE4D | CRABP1 | 5 | 15 | -1 | 1 | 250 | 363 | 330 | 100 | 58334686 | 78640269 | tier4 | In-frame | 12476 | NA | 0.36951 |
| LUAD | TCGA-44-7660-01A | TCGA-44-7660 | PDE4D|DEPDC1B | PDE4D | DEPDC1B | 5 | 5 | -1 | -1 | 2 | 1 | 1 | 0.06 | 59783769 | 59983054 | tier2 | 5UTR-CDS | 12478 | NA | 0.37119 |
| LUAD | TCGA-44-7660-01A | TCGA-44-7660 | PDE4D|ELOVL7 | PDE4D | ELOVL7 | 5 | 5 | -1 | -1 | 3 | 10 | 10 | 1.2 | 59481384 | 60050660 | tier1 | In-frame | 12486 | NA | 0.37063 |
| LUAD | TCGA-L9-A5IP-01A | TCGA-L9-A5IP | PDE4D|RFWD2 | PDE4D | RFWD2 | 5 | 1 | -1 | -1 | 2 | 4 | 4 | 0.073 | 59064073 | 175916375 | tier4 | Out-of-frame | 12502 | NA | 0.37572 |
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