Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BLCA | TCGA-XF-AAMG-01A | TCGA-XF-AAMG | VEGFA|HIST1H4H | VEGFA | HIST1H4H | 6 | 6 | 1 | -1 | 85 | 65 | 61 | 0.13 | 43746655 | 26281815 | tier1 | CDS-3UTR | 19543 | NA | 0 |
| CESC | TCGA-DS-A3LQ-01A | TCGA-DS-A3LQ | VEGFA|RSPH9 | VEGFA | RSPH9 | 6 | 6 | 1 | 1 | 91 | 60 | 56 | 1.1 | 43746655 | 43638526 | tier1 | In-frame | 19545 | NA | 0 |
| KIRC | TCGA-A3-3313-01A | TCGA-A3-3313 | VEGFA|DDX27 | VEGFA | DDX27 | 6 | 20 | 1 | 1 | 2 | 2 | 2 | 1.2 | 43754224 | 47849303 | tier2 | NA | 19542 | NA | 0 |
| SKCM | TCGA-GN-A264-06A | TCGA-GN-A264 | PRPF4B|F13A1 | PRPF4B | F13A1 | 6 | 6 | 1 | -1 | 166 | 273 | 238 | 2.2 | 4021700 | 6197559 | tier1 | In-frame | 13603 | non-validated | 0.37665 |
| LIHC | TCGA-2Y-A9H0-01A | TCGA-2Y-A9H0 | PRPF4B|FAM50B | PRPF4B | FAM50B | 6 | 6 | 1 | 1 | 2 | 3 | 2 | 1.1 | 4021700 | 3850023 | tier2 | CDS-5UTR | 13604 | NA | 0.37488 |
| SARC | TCGA-DX-A23Y-01A | TCGA-DX-A23Y | TTK|TMEM63B | TTK | TMEM63B | 6 | 6 | 1 | 1 | 24 | 17 | 15 | 1.5 | 80721265 | 44119583 | tier1 | In-frame | 18896 | NA | 0 |
| BRCA | TCGA-E2-A1LI-01A | TCGA-E2-A1LI | SLC29A1|DSP | SLC29A1 | DSP | 6 | 6 | 1 | 1 | 2 | 7 | 1 | 0.071 | 44201878 | 7575528 | tier3 | 3UTR-CDS | 16124 | NA | 0 |
| BRCA | TCGA-D8-A13Z-01A | TCGA-D8-A13Z | BTN2A1|HIST1H2AC | BTN2A1 | HIST1H2AC | 6 | 6 | 1 | 1 | 88 | 35 | 32 | 2.2 | 26466316 | 26138282 | tier1 | CDS-3UTR | 2279 | NA | 0.35172 |
| KIRC | TCGA-A3-3313-01A | TCGA-A3-3313 | BTN2A1|HIST1H2BC | BTN2A1 | HIST1H2BC | 6 | 6 | 1 | -1 | 6 | 4 | 4 | 0.07 | 26463753 | 26115363 | tier1 | CDS-3UTR | 2280 | NA | 0.35676 |
| LGG | TCGA-TQ-A7RF-01A | TCGA-TQ-A7RF | LAMA4|TSPAN18 | LAMA4 | TSPAN18 | 6 | 11 | -1 | 1 | 5 | 5 | 5 | 3.4 | 112496515 | 44927958 | tier1 | CDS-5UTR | 9193 | NA | 0.37145 |
| BRCA | TCGA-BH-A1FD-01A | TCGA-BH-A1FD | ERBB2IP|PPWD1 | ERBB2IP | PPWD1 | 5 | 5 | 1 | 1 | 8 | 8 | 7 | 2.3 | 65222634 | 64872706 | tier1 | 5UTR-CDS | 5737 | NA | 0.38005 |
| BRCA | TCGA-PE-A5DC-01A | TCGA-PE-A5DC | ERBB2IP|NLN | ERBB2IP | NLN | 5 | 5 | 1 | 1 | 51 | 53 | 50 | 0.018 | 65222634 | 65105342 | tier1 | 5UTR-CDS | 5736 | NA | 0.38005 |
| LUAD | TCGA-50-5944-01A | TCGA-50-5944 | ERBB2IP|ASXL1 | ERBB2IP | ASXL1 | 5 | 20 | 1 | 1 | 18 | 5 | 4 | 0.62 | 65350779 | 31015931 | tier1 | In-frame | 5733 | NA | 0.37903 |
| BLCA | TCGA-GC-A4ZW-01A | TCGA-GC-A4ZW | ERBB2IP|MYOM2 | ERBB2IP | MYOM2 | 5 | 8 | 1 | 1 | 3 | 2 | 2 | 5.4 | 65222634 | 2005466 | tier1 | 5UTR-CDS | 5735 | NA | 0.37974 |
| BRCA | TCGA-GM-A2DD-01A | TCGA-GM-A2DD | ERBB2IP|C5orf44 | ERBB2IP | C5orf44 | 5 | 5 | 1 | 1 | 2 | 1 | 1 | 0.99 | 65288735 | 64931128 | tier4 | Out-of-frame | 5734 | NA | 0 |
| BRCA | TCGA-A2-A1FW-01A | TCGA-A2-A1FW | ERBB2IP|ZBTB10 | ERBB2IP | ZBTB10 | 5 | 8 | 1 | 1 | 11 | 8 | 8 | 0.26 | 65290692 | 81411729 | tier1 | Out-of-frame | 5739 | NA | 0.38436 |
| SKCM | TCGA-D3-A1Q5-06A | TCGA-D3-A1Q5 | ERBB2IP|ARL15 | ERBB2IP | ARL15 | 5 | 5 | 1 | -1 | 22 | 12 | 9 | 0.77 | 65310553 | 53182543 | tier1 | Out-of-frame | 5732 | non-validated | 0.38407 |
| SKCM | TCGA-D3-A2JH-06A | TCGA-D3-A2JH | ERBB2IP|TMEM232 | ERBB2IP | TMEM232 | 5 | 5 | 1 | -1 | 62 | 30 | 24 | 0.26 | 65350779 | 109760617 | tier1 | Out-of-frame | 5738 | NA | 0.37735 |
| SARC | TCGA-DX-A6YU-01A | TCGA-DX-A6YU | MAN2A1|HTR4 | MAN2A1 | HTR4 | 5 | 5 | 1 | -1 | 12 | 5 | 4 | 0.012 | 109125228 | 147830835 | tier1 | CDS-3UTR | 9816 | NA | 0.35329 |
| BLCA | TCGA-4Z-AA84-01A | TCGA-4Z-AA84 | MAN2A1|HSPA4 | MAN2A1 | HSPA4 | 5 | 5 | 1 | 1 | 4 | 2 | 2 | 2.8 | 109117299 | 132435237 | tier1 | Out-of-frame | 9815 | NA | 0.37372 |
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