Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| UCS | TCGA-N8-A4PI-01A | TCGA-N8-A4PI | CCND3|LUZP1 | CCND3 | LUZP1 | 6 | 1 | -1 | -1 | 3 | 4 | 4 | 0.22 | 42016239 | 23415546 | tier1 | 5UTR-CDS | 3214 | NA | 0.37154 |
| BLCA | TCGA-ZF-AA4X-01A | TCGA-ZF-AA4X | PTK7|GNMT | PTK7 | GNMT | 6 | 6 | 1 | 1 | 2 | 1 | 1 | 0.56 | 43044305 | 42929950 | tier4 | Out-of-frame | 13795 | NA | 0.36906 |
| BRCA | TCGA-BH-A0C0-01A | TCGA-BH-A0C0 | PTK7|PTCRA | PTK7 | PTCRA | 6 | 6 | 1 | 1 | 2 | 8 | 8 | 0.047 | 43114436 | 42890883 | tier4 | Out-of-frame | 13796 | NA | 0.35694 |
| COAD | TCGA-A6-6138-01A | TCGA-A6-6138 | PTK7|DENND4A | PTK7 | DENND4A | 6 | 15 | 1 | -1 | 3 | 1 | 1 | 1.1 | 43044305 | 66053776 | tier2 | CDS-5UTR | 13793 | NA | 0.36587 |
| HNSC | TCGA-BA-4078-01A | TCGA-BA-4078 | PTK7|ANKS1A | PTK7 | ANKS1A | 6 | 6 | 1 | 1 | 23 | 9 | 9 | 0.007 | 43044305 | 34935016 | tier1 | Out-of-frame | 13791 | NA | 0.37813 |
| LUAD | TCGA-05-4420-01A | TCGA-05-4420 | PTK7|DLK2 | PTK7 | DLK2 | 6 | 6 | 1 | -1 | 5 | 4 | 4 | 0.089 | 43044305 | 43422212 | tier1 | In-frame | 13794 | non-validated | 0.36723 |
| SARC | TCGA-DX-A23Y-01A | TCGA-DX-A23Y | PTK7|CNOT2 | PTK7 | CNOT2 | 6 | 12 | 1 | 1 | 21 | 17 | 17 | 2.5 | 43044305 | 70747609 | tier1 | Out-of-frame | 13792 | NA | 0.36092 |
| PRAD | TCGA-EJ-A65E-01A | TCGA-EJ-A65E | DUSP22|PTK7 | DUSP22 | PTK7 | 6 | 6 | 1 | 1 | 7 | 7 | 6 | 0.33 | 348841 | 43106587 | tier1 | In-frame | 5185 | NA | 0.37683 |
| SARC | TCGA-IE-A6BZ-01A | TCGA-IE-A6BZ | DUSP22|BEND6 | DUSP22 | BEND6 | 6 | 6 | 1 | 1 | 48 | 21 | 19 | 0.95 | 311962 | 56846509 | tier1 | CDS-5UTR | 5183 | NA | 0.3705 |
| SKCM | TCGA-DA-A1I8-06A | TCGA-DA-A1I8 | DUSP22|CECR5 | DUSP22 | CECR5 | 6 | 22 | 1 | -1 | 9 | 11 | 10 | 0.49 | 311962 | 17630635 | tier1 | In-frame | 5184 | non-validated | 0.36777 |
| BRCA | TCGA-D8-A27R-01A | TCGA-D8-A27R | SENP6|GPR124 | SENP6 | GPR124 | 6 | 8 | 1 | 1 | 8 | 5 | 5 | 1.5 | 76373234 | 37672414 | tier1 | Out-of-frame | 15583 | NA | 0 |
| PRAD | TCGA-YL-A9WJ-01A | TCGA-YL-A9WJ | SENP6|ACACB | SENP6 | ACACB | 6 | 12 | 1 | 1 | 29 | 41 | 33 | 2.2 | 76333676 | 109680242 | tier1 | In-frame | 15580 | NA | 0 |
| BRCA | TCGA-A2-A04T-01A | TCGA-A2-A04T | SENP6|SLC35A1 | SENP6 | SLC35A1 | 6 | 6 | 1 | 1 | 2 | 2 | 2 | 1.5 | 76312292 | 88210226 | tier2 | Out-of-frame | 15587 | validated | 0 |
| LUSC | TCGA-52-7810-01A | TCGA-52-7810 | SENP6|PPIL6 | SENP6 | PPIL6 | 6 | 6 | 1 | -1 | 6 | 7 | 7 | 0.27 | 76407233 | 109752548 | tier1 | Out-of-frame | 15586 | NA | 0 |
| PRAD | TCGA-HC-7210-01A | TCGA-HC-7210 | SENP6|OOEP | SENP6 | OOEP | 6 | 6 | 1 | -1 | 60 | 45 | 43 | 0.82 | 76344527 | 74079108 | tier1 | Out-of-frame | 15585 | NA | 0 |
| SARC | TCGA-WK-A8XO-01A | TCGA-WK-A8XO | SENP6|AKIRIN2 | SENP6 | AKIRIN2 | 6 | 6 | 1 | -1 | 44 | 36 | 31 | 0.11 | 76388643 | 88385325 | tier1 | Out-of-frame | 15581 | NA | 0 |
| SARC | TCGA-DX-AATS-01A | TCGA-DX-AATS | SENP6|BAI3 | SENP6 | BAI3 | 6 | 6 | 1 | 1 | 17 | 13 | 12 | 0.41 | 76312292 | 70064125 | tier1 | Out-of-frame | 15582 | NA | 0 |
| UCEC | TCGA-AJ-A3IA-01A | TCGA-AJ-A3IA | SENP6|KATNA1 | SENP6 | KATNA1 | 6 | 6 | 1 | -1 | 3 | 4 | 4 | 0.45 | 76357517 | 149959696 | tier1 | CDS-5UTR | 15584 | NA | 0 |
| SARC | TCGA-IE-A6BZ-01A | TCGA-IE-A6BZ | VEGFA|NRD1 | VEGFA | NRD1 | 6 | 1 | 1 | -1 | 74 | 36 | 33 | 0.49 | 43739049 | 52306186 | tier1 | Out-of-frame | 19544 | NA | 0 |
| LGG | TCGA-TM-A7CF-01A | TCGA-TM-A7CF | VEGFA|STK38 | VEGFA | STK38 | 6 | 6 | 1 | -1 | 22 | 7 | 4 | 0.45 | 43745402 | 36467767 | tier1 | In-frame | 19546 | validated | 0 |
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