Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LIHC | TCGA-2Y-A9H9-01A | TCGA-2Y-A9H9 | GPLD1|FAM65B | GPLD1 | FAM65B | 6 | 6 | -1 | -1 | 30 | 36 | 29 | 0.056 | 24486303 | 24876045 | tier1 | CDS-5UTR | 7343 | NA | 0.34931 |
| PRAD | TCGA-HC-7209-01A | TCGA-HC-7209 | GPLD1|BANK1 | GPLD1 | BANK1 | 6 | 4 | -1 | 1 | 37 | 15 | 10 | 0.44 | 24486303 | 102776192 | tier1 | Out-of-frame | 7342 | NA | 0.36498 |
| LUAD | TCGA-69-7980-01A | TCGA-69-7980 | ALDH5A1|MAP3K5 | ALDH5A1 | MAP3K5 | 6 | 6 | 1 | -1 | 6 | 5 | 5 | 0.28 | 24505213 | 136880014 | tier2 | In-frame | 807 | NA | 0.38712 |
| CESC | TCGA-Q1-A6DT-01A | TCGA-Q1-A6DT | SLC16A10|NME7 | SLC16A10 | NME7 | 6 | 1 | 1 | -1 | 103 | 48 | 43 | 2.4 | 111498868 | 169102055 | tier1 | In-frame | 16027 | NA | 0 |
| BRCA | TCGA-E9-A1RE-01A | TCGA-E9-A1RE | GPR126|CLSTN2 | GPR126 | CLSTN2 | 6 | 3 | 1 | 1 | 14 | 4 | 3 | 0.1 | 142630781 | 139894793 | tier1 | Out-of-frame | 7358 | NA | 0.35229 |
| LIHC | TCGA-CC-5263-01A | TCGA-CC-5263 | GPR126|VTA1 | GPR126 | VTA1 | 6 | 6 | 1 | 1 | 14 | 11 | 11 | 0.068 | 142623468 | 142487365 | tier1 | 5UTR-CDS | 7359 | NA | 0.38285 |
| LIHC | TCGA-DD-AAW3-01A | TCGA-DD-AAW3 | GPR126|VTA1 | GPR126 | VTA1 | 6 | 6 | 1 | 1 | 5 | 5 | 4 | 0.068 | 142731056 | 142510563 | tier2 | Out-of-frame | 7360 | NA | 0.38285 |
| BRCA | TCGA-E2-A1LE-01A | TCGA-E2-A1LE | PDE10A|PSMB1 | PDE10A | PSMB1 | 6 | 6 | -1 | -1 | 35 | 33 | 30 | 0.27 | 165956928 | 170846428 | tier1 | In-frame | 12461 | NA | 0.36707 |
| BRCA | TCGA-D8-A13Z-01A | TCGA-D8-A13Z | PDE10A|POLB | PDE10A | POLB | 6 | 8 | -1 | 1 | 125 | 123 | 105 | 1.4 | 166075435 | 42229081 | tier1 | 5UTR-CDS | 12460 | NA | 0.3704 |
| GBM | TCGA-14-1402-02A | TCGA-14-1402 | PDE10A|ZNF695 | PDE10A | ZNF695 | 6 | 1 | -1 | -1 | 2 | 4 | 4 | 0.28 | 166075435 | 247109129 | tier2 | 5UTR-CDS | 12462 | validated | 0.3593 |
| SARC | TCGA-DX-AB2F-01A | TCGA-DX-AB2F | PDE10A|DDX23 | PDE10A | DDX23 | 6 | 12 | -1 | -1 | 2 | 1 | 1 | 0.002 | 166075435 | 49239565 | tier4 | 5UTR-CDS | 12459 | NA | 0.35613 |
| STAD | TCGA-BR-A4QI-01A | TCGA-BR-A4QI | CCND3|EHMT2 | CCND3 | EHMT2 | 6 | 6 | -1 | -1 | 9 | 232 | 204 | 0.1 | 42016239 | 31848625 | tier1 | 5UTR-CDS | 3211 | NA | 0.38179 |
| BLCA | TCGA-DK-A6B2-01A | TCGA-DK-A6B2 | CCND3|TRERF1 | CCND3 | TRERF1 | 6 | 6 | -1 | -1 | 15 | 4 | 3 | 0.19 | 42016239 | 42222664 | tier1 | 5UTR-CDS | 3217 | NA | 0.38486 |
| BRCA | TCGA-AR-A1AI-01A | TCGA-AR-A1AI | CCND3|GUCA1B | CCND3 | GUCA1B | 6 | 6 | -1 | -1 | 27 | 29 | 26 | 1.1 | 42016239 | 42156469 | tier1 | 5UTR-CDS | 3213 | NA | 0.37501 |
| GBM | TCGA-06-0129-01A | TCGA-06-0129 | CCND3|C6orf89 | CCND3 | C6orf89 | 6 | 6 | -1 | 1 | 2 | 10 | 9 | 0.76 | 42016239 | 36846784 | tier2 | 5UTR-5UTR | 3210 | NA | 0 |
| LUSC | TCGA-NC-A5HJ-01A | TCGA-NC-A5HJ | CCND3|TRERF1 | CCND3 | TRERF1 | 6 | 6 | -1 | -1 | 7 | 3 | 3 | 0.19 | 42016239 | 42268487 | tier1 | 5UTR-5UTR | 3218 | NA | 0.38486 |
| LUSC | TCGA-92-8063-01A | TCGA-92-8063 | CCND3|VPS52 | CCND3 | VPS52 | 6 | 6 | -1 | -1 | 3 | 1 | 1 | 0.28 | 42016239 | 33237596 | tier2 | 5UTR-CDS | 3219 | NA | 0.37141 |
| PRAD | TCGA-EJ-8474-01A | TCGA-EJ-8474 | CCND3|EXOC4 | CCND3 | EXOC4 | 6 | 7 | -1 | 1 | 4 | 1 | 1 | 0.1 | 42016239 | 133682245 | tier3 | 5UTR-CDS | 3212 | NA | 0.36929 |
| STAD | TCGA-BR-8373-01A | TCGA-BR-8373 | CCND3|TRERF1 | CCND3 | TRERF1 | 6 | 6 | -1 | -1 | 3 | 23 | 19 | 0.19 | 42016239 | 42330817 | tier1 | 5UTR-5UTR | 3216 | validated | 0.38486 |
| UCEC | TCGA-AJ-A3NH-01A | TCGA-AJ-A3NH | CCND3|TRERF1 | CCND3 | TRERF1 | 6 | 6 | -1 | -1 | 4 | 5 | 5 | 0.19 | 42016239 | 42268487 | tier1 | 5UTR-5UTR | 3215 | NA | 0.38486 |
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