Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-A2-A04T-01A | TCGA-A2-A04T | RNGTT|BACH2 | RNGTT | BACH2 | 6 | 6 | -1 | -1 | 8 | 3 | 3 | 0.12 | 89650790 | 90718575 | tier1 | CDS-5UTR | 14855 | non-validated | 0 |
| ESCA | TCGA-LN-A7HV-01A | TCGA-LN-A7HV | RNGTT|SRSF12 | RNGTT | SRSF12 | 6 | 6 | -1 | -1 | 4 | 10 | 8 | 2 | 89673065 | 89816977 | tier1 | Out-of-frame | 14856 | NA | 0 |
| SKCM | TCGA-EE-A2A0-06A | TCGA-EE-A2A0 | RNGTT|AHI1 | RNGTT | AHI1 | 6 | 6 | -1 | -1 | 6 | 10 | 10 | 0.94 | 89479493 | 135606785 | tier1 | Out-of-frame | 14854 | non-validated | 0 |
| LUAD | TCGA-55-6978-01A | TCGA-55-6978 | PPARD|WNK4 | PPARD | WNK4 | 6 | 17 | 1 | 1 | 5 | 4 | 2 | 0.16 | 35314927 | 40945610 | tier1 | 5UTR-CDS | 13229 | NA | 0.38448 |
| SARC | TCGA-X6-A7WB-01A | TCGA-X6-A7WB | PPARD|SLC22A7 | PPARD | SLC22A7 | 6 | 6 | 1 | 1 | 12 | 6 | 6 | 0.098 | 35378994 | 43267636 | tier1 | In-frame | 13226 | NA | 0.38041 |
| ESCA | TCGA-L5-A4OQ-01A | TCGA-L5-A4OQ | PPARD|ANKS1A | PPARD | ANKS1A | 6 | 6 | 1 | 1 | 2 | 6 | 5 | 0.24 | 35314927 | 34949467 | tier2 | 5UTR-CDS | 13225 | NA | 0.38527 |
| PRAD | TCGA-EJ-5498-01A | TCGA-EJ-5498 | PPARD|WDR27 | PPARD | WDR27 | 6 | 6 | 1 | -1 | 14 | 4 | 3 | 0.47 | 35314927 | 170002417 | tier1 | 5UTR-CDS | 13228 | NA | 0.38408 |
| SARC | TCGA-DX-A23Z-01A | TCGA-DX-A23Z | PPARD|SRGAP1 | PPARD | SRGAP1 | 6 | 12 | 1 | 1 | 2 | 5 | 5 | 1.2 | 35378994 | 64502712 | tier2 | In-frame | 13227 | NA | 0.38805 |
| SARC | TCGA-3B-A9HL-01A | TCGA-3B-A9HL | MAPK14|EHMT1 | MAPK14 | EHMT1 | 6 | 9 | 1 | 1 | 2 | 1 | 1 | 0.22 | 36063843 | 140605419 | tier3 | In-frame | 9942 | NA | 0.38201 |
| BRCA | TCGA-AO-A129-01A | TCGA-AO-A129 | MAPK14|EFHA1 | MAPK14 | EFHA1 | 6 | 13 | 1 | -1 | 23 | 2 | 2 | 3.6 | 36043739 | 22113827 | tier1 | In-frame | 9941 | NA | 0.38249 |
| HNSC | TCGA-F7-A50I-01A | TCGA-F7-A50I | MAPK14|ANK1 | MAPK14 | ANK1 | 6 | 8 | 1 | -1 | 7 | 3 | 3 | 0.37 | 35996050 | 41615655 | tier1 | Out-of-frame | 9940 | NA | 0.38763 |
| SKCM | TCGA-EB-A44Q-06A | TCGA-EB-A44Q | MAPK14|SIN3A | MAPK14 | SIN3A | 6 | 15 | 1 | -1 | 6 | 8 | 6 | 0.3 | 35996050 | 75722749 | tier1 | CDS-5UTR | 9943 | NA | 0.39004 |
| LIHC | TCGA-BC-A10Y-01A | TCGA-BC-A10Y | STK38|TDRD7 | STK38 | TDRD7 | 6 | 9 | -1 | 1 | 79 | 31 | 28 | 0.14 | 36507849 | 100249454 | tier1 | In-frame | 17084 | NA | 0 |
| UCEC | TCGA-A5-A7WK-01A | TCGA-A5-A7WK | STK38|GMDS | STK38 | GMDS | 6 | 6 | -1 | -1 | 11 | 6 | 6 | 0.78 | 36467650 | 1742820 | tier1 | Out-of-frame | 17083 | NA | 0 |
| UCEC | TCGA-A5-A7WK-01A | TCGA-A5-A7WK | ICK|FAM83B | ICK | FAM83B | 6 | 6 | -1 | 1 | 9 | 4 | 4 | 0.2 | 52883128 | 54734985 | tier1 | CDS-5UTR | 8048 | NA | 0.37467 |
| BRCA | TCGA-BH-A1FD-01A | TCGA-BH-A1FD | CD83|LAMA2 | CD83 | LAMA2 | 6 | 6 | 1 | 1 | 5 | 3 | 3 | 0.07 | 14118296 | 129663488 | tier1 | In-frame | 3308 | NA | 0.36626 |
| SARC | TCGA-SI-A71Q-01A | TCGA-SI-A71Q | CD83|EHF | CD83 | EHF | 6 | 11 | 1 | 1 | 4 | 8 | 7 | 0.96 | 14118296 | 34664175 | tier1 | CDS-5UTR | 3307 | NA | 0.35885 |
| LUAD | TCGA-49-4488-01A | TCGA-49-4488 | BMP5|COL21A1 | BMP5 | COL21A1 | 6 | 6 | -1 | -1 | 4 | 1 | 1 | 0.05 | 55739174 | 55966323 | tier3 | Out-of-frame | 2128 | NA | 0.3585 |
| BRCA | TCGA-E9-A2JS-01A | TCGA-E9-A2JS | PTP4A1|EYS | PTP4A1 | EYS | 6 | 6 | 1 | -1 | 4 | 4 | 4 | 0.5 | 64286890 | 65532715 | tier1 | Out-of-frame | 13800 | NA | 0.36282 |
| GBM | TCGA-76-4929-01A | TCGA-76-4929 | GPLD1|TDP2 | GPLD1 | TDP2 | 6 | 6 | -1 | -1 | 2 | 7 | 6 | 3.2 | 24433415 | 24651297 | tier2 | In-frame | 7344 | NA | 0.34613 |
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