Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| UCEC | TCGA-AX-A3G3-01A | TCGA-AX-A3G3 | SLC38A1|GTSE1 | SLC38A1 | GTSE1 | 12 | 22 | -1 | 1 | 36 | 24 | 24 | 0.11 | 46662648 | 46719087 | tier1 | 5UTR-CDS | 16176 | NA | 0 |
| SKCM | TCGA-EE-A3AG-06A | TCGA-EE-A3AG | GAPDH|HSPB1 | GAPDH | HSPB1 | 12 | 7 | 1 | 1 | 2 | 1 | 1 | 0.73 | 6647481 | 75931861 | tier3 | 3UTR-5UTR | 6951 | NA | 0.37047 |
| LIHC | TCGA-CC-A7IL-01A | TCGA-CC-A7IL | GAPDH|APOA2 | GAPDH | APOA2 | 12 | 1 | 1 | -1 | 2 | 3 | 3 | 0.37 | 6647481 | 161193418 | tier3 | 3UTR-5UTR | 6949 | NA | 0.36473 |
| LIHC | TCGA-DD-AACJ-01A | TCGA-DD-AACJ | GAPDH|APOA2 | GAPDH | APOA2 | 12 | 1 | 1 | -1 | 2 | 2 | 2 | 0.37 | 6647481 | 161193418 | tier3 | 3UTR-5UTR | 6950 | NA | 0.36473 |
| SARC | TCGA-DX-A23R-01A | TCGA-DX-A23R | CHD4|CPM | CHD4 | CPM | 12 | 12 | -1 | -1 | 404 | 306 | 285 | 0.45 | 6700632 | 69265736 | tier1 | Out-of-frame | 3620 | non-validated | 0.37511 |
| BRCA | TCGA-AO-A12A-01A | TCGA-AO-A12A | CHD4|CLEC9A | CHD4 | CLEC9A | 12 | 12 | -1 | 1 | 31 | 10 | 9 | 0.032 | 6686951 | 10194065 | tier1 | CDS-5UTR | 3619 | NA | 0.37422 |
| BRCA | TCGA-A1-A0SK-01A | TCGA-A1-A0SK | CHD4|DTX1 | CHD4 | DTX1 | 12 | 12 | -1 | 1 | 32 | 22 | 22 | 2.8 | 6690210 | 113515229 | tier1 | In-frame | 3621 | NA | 0.37486 |
| SKCM | TCGA-D3-A3CC-06A | TCGA-D3-A3CC | ING4|A2ML1 | ING4 | A2ML1 | 12 | 12 | -1 | 1 | 25 | 285 | 278 | 0.008 | 6772231 | 9027021 | tier1 | Out-of-frame | 8233 | NA | 0.3643 |
| BLCA | TCGA-FD-A3NA-01A | TCGA-FD-A3NA | PTPN6|LEPREL2 | PTPN6 | LEPREL2 | 12 | 12 | 1 | 1 | 22 | 9 | 5 | 0.064 | 7066948 | 6948164 | tier1 | In-frame | 13839 | NA | 0.38263 |
| BLCA | TCGA-ZF-AA51-01A | TCGA-ZF-AA51 | PTPN6|LRRC23 | PTPN6 | LRRC23 | 12 | 12 | 1 | 1 | 6 | 4 | 4 | 1.7 | 7061340 | 7014749 | tier1 | CDS-5UTR | 13840 | NA | 0.38165 |
| LUAD | TCGA-NJ-A4YF-01A | TCGA-NJ-A4YF | LPCAT3|LRRC23 | LPCAT3 | LRRC23 | 12 | 12 | -1 | 1 | 6 | 1 | 1 | 0.037 | 7125578 | 6992868 | tier2 | CDS-5UTR | 9442 | NA | 0.34798 |
| KIRP | TCGA-IA-A40Y-01A | TCGA-IA-A40Y | LDHB|PEX1 | LDHB | PEX1 | 12 | 7 | -1 | -1 | 2 | 95 | 76 | 0.83 | 21788276 | 92146729 | tier4 | 3UTR-5UTR | 9264 | non-validated | 0.35681 |
| LGG | TCGA-CS-4943-01A | TCGA-CS-4943 | LDHB|CCT5 | LDHB | CCT5 | 12 | 5 | -1 | 1 | 2 | 25 | 23 | 0.7 | 21788276 | 10250033 | tier3 | 3UTR-5UTR | 9262 | NA | 0.36611 |
| UCEC | TCGA-AJ-A3QS-01A | TCGA-AJ-A3QS | LDHB|CTNNA2 | LDHB | CTNNA2 | 12 | 2 | -1 | 1 | 77 | 68 | 62 | 2.9 | 21790005 | 80620336 | tier1 | In-frame | 9263 | NA | 0.35349 |
| BLCA | TCGA-XF-AAMT-01A | TCGA-XF-AAMT | RAB35|GCN1L1 | RAB35 | GCN1L1 | 12 | 12 | -1 | -1 | 27 | 28 | 24 | 0.26 | 120546221 | 120587847 | tier1 | In-frame | 14076 | NA | 0 |
| BRCA | TCGA-AQ-A1H2-01A | TCGA-AQ-A1H2 | FRK|DTNBP1 | FRK | DTNBP1 | 6 | 6 | -1 | -1 | 3 | 10 | 9 | 2.4 | 116381131 | 15533626 | tier1 | Out-of-frame | 6716 | NA | 0.37563 |
| CHOL | TCGA-ZH-A8Y1-01A | TCGA-ZH-A8Y1 | FRK|BEND3 | FRK | BEND3 | 6 | 6 | -1 | -1 | 2 | 2 | 2 | 0.67 | 116381131 | 107420500 | tier2 | CDS-5UTR | 6715 | NA | 0.37482 |
| SARC | TCGA-IF-A3RQ-01A | TCGA-IF-A3RQ | FRK|SYT1 | FRK | SYT1 | 6 | 12 | -1 | 1 | 4 | 1 | 1 | 0.011 | 116288714 | 79611283 | tier2 | CDS-5UTR | 6717 | NA | 0.37877 |
| PRAD | TCGA-HC-8266-01A | TCGA-HC-8266 | MAK|INTS12 | MAK | INTS12 | 6 | 4 | -1 | -1 | 13 | 9 | 9 | 3.4 | 10791908 | 106604474 | tier1 | Out-of-frame | 9778 | NA | 0.35048 |
| BRCA | TCGA-JL-A3YW-01A | TCGA-JL-A3YW | MAK|ELOVL2 | MAK | ELOVL2 | 6 | 6 | -1 | -1 | 2 | 1 | 1 | 2 | 10784657 | 10984139 | tier3 | Out-of-frame | 9777 | NA | 0.35024 |
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