Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LIHC | TCGA-BC-A10Y-01A | TCGA-BC-A10Y | CAMKK2|ANAPC5 | CAMKK2 | ANAPC5 | 12 | 12 | -1 | -1 | 22 | 34 | 30 | 1.7 | 121734441 | 121758262 | tier1 | 5UTR-CDS | 2927 | NA | 0.3777 |
| SARC | TCGA-DX-A1KW-01A | TCGA-DX-A1KW | CAMKK2|DIP2B | CAMKK2 | DIP2B | 12 | 12 | -1 | 1 | 42 | 63 | 57 | 1.7 | 121734441 | 51019759 | tier1 | 5UTR-CDS | 2928 | validated | 0.3727 |
| PRAD | TCGA-G9-6356-01A | TCGA-G9-6356 | ATP5B|THSD4 | ATP5B | THSD4 | 12 | 15 | -1 | 1 | 2 | 5 | 2 | 0.014 | 57031959 | 72072881 | tier4 | 3UTR-CDS | 1737 | NA | 0.36275 |
| BRCA | TCGA-AO-A03L-01A | TCGA-AO-A03L | ATP5B|ANKS1A | ATP5B | ANKS1A | 12 | 6 | -1 | 1 | 2 | 2 | 1 | 1.4 | 57031959 | 34977682 | tier4 | NA | 1736 | non-validated | 0.37707 |
| BRCA | TCGA-C8-A12V-01A | TCGA-C8-A12V | TENC1|ACVR1B | TENC1 | ACVR1B | 12 | 12 | 1 | 1 | 4 | 7 | 7 | 0.23 | 53445747 | 52378976 | tier1 | 5UTR-CDS | 17656 | NA | 0 |
| BRCA | TCGA-A7-A13D-01B | TCGA-A7-A13D | METAP2|VEZT | METAP2 | VEZT | 12 | 12 | 1 | 1 | 2 | 1 | 1 | 0.59 | 95868106 | 95663827 | tier2 | Out-of-frame | 10262 | non-validated | 0.36867 |
| LIHC | TCGA-G3-AAUZ-01A | TCGA-G3-AAUZ | METAP2|VEZT | METAP2 | VEZT | 12 | 12 | 1 | 1 | 6 | 3 | 3 | 0.59 | 95889874 | 95689827 | tier1 | In-frame | 10263 | NA | 0.36867 |
| SARC | TCGA-DX-A3U5-01A | TCGA-DX-A3U5 | LTA4H|BTBD11 | LTA4H | BTBD11 | 12 | 12 | -1 | 1 | 59 | 35 | 34 | 0.44 | 96396738 | 107914264 | tier1 | Out-of-frame | 9640 | validated | 0.35809 |
| SARC | TCGA-3B-A9HL-01A | TCGA-3B-A9HL | LTA4H|STAB2 | LTA4H | STAB2 | 12 | 12 | -1 | 1 | 2 | 1 | 1 | 2.2 | 96429139 | 104076983 | tier2 | In-frame | 9641 | NA | 0.36561 |
| LUSC | TCGA-39-5036-01A | TCGA-39-5036 | WNT5B|NINJ2 | WNT5B | NINJ2 | 12 | 12 | 1 | -1 | 3 | 3 | 3 | 1.2 | 1640116 | 675344 | tier1 | NA | 19901 | NA | 0 |
| SARC | TCGA-QC-AA9N-01A | TCGA-QC-AA9N | TRPV4|KSR2 | TRPV4 | KSR2 | 12 | 12 | -1 | -1 | 2 | 3 | 3 | 0.16 | 110271155 | 118020164 | tier2 | 5UTR-CDS | 18741 | NA | 0 |
| CESC | TCGA-IR-A3LI-01A | TCGA-IR-A3LI | TRPV4|GIT2 | TRPV4 | GIT2 | 12 | 12 | -1 | -1 | 16 | 12 | 12 | 0.015 | 110230168 | 110391039 | tier1 | In-frame | 18740 | NA | 0 |
| BLCA | TCGA-K4-A3WU-01B | TCGA-K4-A3WU | DUSP16|GPR19 | DUSP16 | GPR19 | 12 | 12 | -1 | -1 | 8 | 15 | 11 | 0.018 | 12639962 | 12837441 | tier1 | CDS-5UTR | 5181 | NA | 0.37367 |
| PRAD | TCGA-G9-7525-01A | TCGA-G9-7525 | DUSP16|LOH12CR1 | DUSP16 | LOH12CR1 | 12 | 12 | -1 | 1 | 18 | 9 | 8 | 0.021 | 12715051 | 12588562 | tier1 | 5UTR-CDS | 5182 | NA | 0.3763 |
| LUSC | TCGA-85-A50Z-01A | TCGA-85-A50Z | ALDH2|LRBA | ALDH2 | LRBA | 12 | 4 | 1 | -1 | 5 | 3 | 2 | 2.6 | 112237867 | 151793907 | tier1 | In-frame | 800 | NA | 0.36381 |
| SARC | TCGA-3B-A9HO-01A | TCGA-3B-A9HO | ALDH2|LIN7A | ALDH2 | LIN7A | 12 | 12 | 1 | -1 | 2 | 7 | 7 | 1.5 | 112204900 | 81242101 | tier2 | In-frame | 799 | NA | 0.37327 |
| HNSC | TCGA-BA-6871-01A | TCGA-BA-6871 | SCNN1A|DCP1B | SCNN1A | DCP1B | 12 | 12 | -1 | -1 | 60 | 10 | 9 | 0.022 | 6457893 | 2055452 | tier2 | In-frame | 15431 | NA | 0 |
| KIRP | TCGA-P4-AAVM-01A | TCGA-P4-AAVM | LTBR|PRSS3 | LTBR | PRSS3 | 12 | 9 | 1 | 1 | 145 | 184 | 159 | 0.93 | 6495610 | 33796641 | tier1 | In-frame | 9659 | NA | 0.37245 |
| HNSC | TCGA-CQ-A4C9-01A | TCGA-CQ-A4C9 | SLC38A1|PCTP | SLC38A1 | PCTP | 12 | 17 | -1 | 1 | 3 | 2 | 2 | 0.97 | 46662309 | 53844696 | tier1 | 5UTR-CDS | 16177 | NA | 0 |
| LIHC | TCGA-ED-A82E-01A | TCGA-ED-A82E | SLC38A1|UNKL | SLC38A1 | UNKL | 12 | 16 | -1 | -1 | 14 | 9 | 8 | 2.2 | 46622936 | 1453345 | tier1 | In-frame | 16178 | NA | 0 |
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