TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
LUSC	TCGA-43-5668-01A	TCGA-43-5668	MDK\|ERBB3	MDK	ERBB3	11	12	1	1	2	9	2	0.85	46405349	56492035	tier2	3UTR-5UTR	10112	NA	0.38638
UCEC	TCGA-B5-A3FD-01A	TCGA-B5-A3FD	MDK\|PARP1	MDK	PARP1	11	1	1	-1	2	156	90	0.57	46405349	224102800	tier4	NA	10113	NA	0.38331
UCS	TCGA-N6-A4VD-01A	TCGA-N6-A4VD	MDK\|SEC63	MDK	SEC63	11	6	1	-1	2	16	7	0.26	46405349	108214782	tier4	NA	10114	NA	0.37308
LGG	TCGA-FG-5963-02A	TCGA-FG-5963	CD81\|SUPT16H	CD81	SUPT16H	11	14	1	-1	2	16	13	3	2418627	21829491	tier3	3UTR-CDS	3304	NA	0.37711
THYM	TCGA-ZB-A96E-01A	TCGA-ZB-A96E	CD81\|TYK2	CD81	TYK2	11	19	1	-1	2	2	2	0.066	2418627	10491352	tier3	3UTR-5UTR	3306	NA	0.37646
PRAD	TCGA-HC-7747-01A	TCGA-HC-7747	CD81\|SURF4	CD81	SURF4	11	9	1	-1	2	70	10	0.16	2418627	136239529	tier3	3UTR-5UTR	3305	NA	0.36311
READ	TCGA-AG-3725-01A	TCGA-AG-3725	CD81\|NDUFV1	CD81	NDUFV1	11	11	1	1	2	17	15	1	2418627	67375697	tier3	NA	3303	NA	0.36454
SKCM	TCGA-FS-A1YY-06A	TCGA-FS-A1YY	CD81\|DNM1L	CD81	DNM1L	11	12	1	1	2	32	27	3	2418627	32905677	tier4	NA	3302	NA	0.37083
UCS	TCGA-NA-A5I1-01A	TCGA-NA-A5I1	CD81\|ARMC3	CD81	ARMC3	11	10	1	1	57	65	54	0.52	2398845	23321790	tier1	Out-of-frame	3301	NA	0.36624
PAAD	TCGA-IB-7652-01A	TCGA-IB-7652	SLC35F2\|AMPD3	SLC35F2	AMPD3	11	11	-1	1	4	2	2	1.7	107673727	10483062	tier1	Out-of-frame	16164	NA	0
SKCM	TCGA-D9-A4Z3-01A	TCGA-D9-A4Z3	SLC35F2\|PIWIL4	SLC35F2	PIWIL4	11	11	-1	1	4	1	1	4.6	107729384	94340605	tier3	Out-of-frame	16165	NA	0
PRAD	TCGA-G9-6351-01A	TCGA-G9-6351	TCIRG1\|TMC5	TCIRG1	TMC5	11	16	1	1	2	1	1	0.13	67818362	19451282	tier3	3UTR-5UTR	17611	NA	0
SARC	TCGA-IW-A3M5-01A	TCGA-IW-A3M5	LEPREL2\|CCT5	LEPREL2	CCT5	12	5	1	1	2	48	43	0.34	6949010	10250033	tier3	3UTR-5UTR	9299	non-validated	0.36587
GBM	TCGA-06-0129-01A	TCGA-06-0129	SLC11A2\|PFKM	SLC11A2	PFKM	12	12	-1	1	7	15	14	5.7	51386593	48516550	tier1	Out-of-frame	16009	NA	0
PRAD	TCGA-EJ-A46B-01A	TCGA-EJ-A46B	CAMKK2\|KDM2B	CAMKK2	KDM2B	12	12	-1	-1	3	4	3	0.3	121707331	121932468	tier1	In-frame	2931	NA	0.37123
PRAD	TCGA-EJ-A65J-01A	TCGA-EJ-A65J	CAMKK2\|KDM2B	CAMKK2	KDM2B	12	12	-1	-1	43	14	12	0.3	121708701	121891147	tier1	In-frame	2932	NA	0.37123
PRAD	TCGA-G9-6333-01A	TCGA-G9-6333	CAMKK2\|KDM2B	CAMKK2	KDM2B	12	12	-1	-1	7	6	3	0.3	121675497	121954666	tier1	3UTR-CDS	2933	NA	0.37123
UCEC	TCGA-B5-A3S1-01A	TCGA-B5-A3S1	CAMKK2\|KDM2B	CAMKK2	KDM2B	12	12	-1	-1	2	7	7	0.3	121734441	121868272	tier2	5UTR-CDS	2930	NA	0.37123
GBM	TCGA-06-0129-01A	TCGA-06-0129	CAMKK2\|NR2C1	CAMKK2	NR2C1	12	12	-1	-1	3	20	16	0.14	121682943	95461167	tier1	CDS-5UTR	2934	NA	0.38184
LIHC	TCGA-FV-A495-01A	TCGA-FV-A495	CAMKK2\|HPD	CAMKK2	HPD	12	12	-1	-1	21	77	76	0.11	121734441	122277954	tier1	5UTR-CDS	2929	validated	0.37428

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