Mutation
The putative cancer-causing PDGs driven by somatic mutations were predicted by integration of five complementary methods to identify the genes with mutations that have significant signs of positive selection during tumor evolution.
Summary of mutation frequency of the PDGs in each cancer type
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| HGNC Symbol | Ensembl Gene ID | ACC_Mut% | BLCA_Mut% | BRCA_Mut% | CESC_Mut% | CHOL_Mut% | COAD_Mut% | DLBC_Mut% | ESCA_Mut% | GBM_Mut% | HNSC_Mut% | KICH_Mut% | KIRC_Mut% | KIRP_Mut% | LAML_Mut% | LGG_Mut% | LIHC_Mut% | LUAD_Mut% | LUSC_Mut% | MESO_Mut% | OV_Mut% | PAAD_Mut% | PCPG_Mut% | PRAD_Mut% | READ_Mut% | SARC_Mut% | SKCM_Mut% | STAD_Mut% | TGCT_Mut% | THCA_Mut% | THYM_Mut% | UCEC_Mut% | UCS_Mut% | UVM_Mut% |
| C6orf120 | ENSG00000185127 | 0.00 | 0.51 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.40 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.28 | 0.19 | 0.21 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.22 | 0.00 | 0.00 |
| APLP2 | ENSG00000084234 | 0.00 | 1.53 | 0.21 | 0.73 | 0.00 | 0.00 | 0.00 | 0.55 | 1.03 | 0.80 | 0.00 | 0.27 | 0.00 | 0.00 | 0.00 | 0.28 | 0.56 | 0.64 | 0.00 | 0.49 | 0.57 | 0.00 | 0.20 | 0.00 | 0.43 | 0.95 | 0.54 | 0.00 | 0.00 | 0.00 | 0.44 | 0.00 | 0.00 |
| TLR3 | ENSG00000164342 | 0.00 | 2.29 | 0.83 | 1.82 | 0.00 | 0.97 | 2.70 | 0.00 | 0.52 | 0.20 | 0.00 | 0.00 | 0.71 | 0.00 | 0.20 | 1.11 | 0.56 | 2.36 | 0.00 | 0.25 | 0.00 | 0.00 | 0.00 | 1.56 | 0.86 | 3.08 | 1.08 | 0.00 | 0.20 | 0.00 | 0.89 | 0.00 | 0.00 |
| JAM3 | ENSG00000166086 | 0.00 | 0.76 | 0.10 | 0.00 | 0.00 | 0.65 | 0.00 | 0.55 | 0.00 | 0.00 | 0.00 | 0.00 | 0.36 | 0.74 | 0.00 | 1.39 | 0.75 | 0.43 | 0.00 | 0.25 | 0.00 | 0.56 | 0.00 | 0.00 | 0.00 | 0.71 | 0.27 | 0.00 | 0.00 | 0.00 | 0.67 | 0.00 | 0.00 |
| SLC39A9 | ENSG00000029364 | 0.00 | 0.25 | 0.21 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.52 | 0.80 | 0.00 | 0.00 | 0.00 | 0.00 | 0.20 | 0.28 | 0.38 | 0.00 | 0.00 | 0.25 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.47 | 0.00 | 0.00 | 0.00 | 0.00 | 1.33 | 0.00 | 0.00 |
| ITM2B | ENSG00000136156 | 0.00 | 0.25 | 0.10 | 0.36 | 0.00 | 0.00 | 0.00 | 0.00 | 0.26 | 0.20 | 0.00 | 0.54 | 0.36 | 0.00 | 0.00 | 0.28 | 0.38 | 0.21 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.71 | 0.00 | 0.00 | 0.00 | 0.00 | 0.67 | 0.00 | 0.00 |
| SIDT2 | ENSG00000149577 | 0.00 | 0.76 | 0.72 | 0.73 | 0.00 | 0.97 | 0.00 | 0.00 | 0.77 | 1.00 | 0.00 | 0.54 | 0.71 | 1.47 | 0.00 | 0.28 | 0.56 | 1.07 | 0.00 | 0.74 | 0.57 | 0.00 | 0.20 | 0.00 | 0.43 | 1.42 | 0.54 | 0.00 | 0.20 | 0.00 | 0.22 | 0.00 | 0.00 |
| F2RL1 | ENSG00000164251 | 0.00 | 1.27 | 0.00 | 0.73 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.20 | 0.00 | 0.27 | 0.36 | 0.00 | 0.59 | 0.00 | 0.19 | 1.07 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.18 | 0.27 | 0.00 | 0.00 | 0.00 | 0.44 | 1.82 | 0.00 |
| BMP1 | ENSG00000168487 | 1.11 | 1.02 | 0.21 | 0.36 | 0.00 | 1.29 | 0.00 | 1.10 | 0.52 | 0.60 | 1.54 | 0.81 | 0.71 | 0.00 | 0.00 | 0.28 | 1.51 | 0.86 | 1.23 | 0.74 | 1.15 | 0.56 | 0.00 | 0.00 | 0.00 | 1.66 | 0.81 | 0.00 | 0.20 | 0.00 | 3.33 | 0.00 | 1.25 |
| TNFRSF14 | ENSG00000157873 | 0.00 | 0.00 | 0.10 | 0.73 | 0.00 | 0.65 | 5.41 | 0.00 | 0.26 | 0.20 | 0.00 | 0.00 | 0.36 | 0.00 | 0.20 | 0.00 | 0.19 | 0.43 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.78 | 0.00 | 0.47 | 0.27 | 0.00 | 0.00 | 0.00 | 0.44 | 1.82 | 0.00 |
| ST14 | ENSG00000149418 | 0.00 | 1.78 | 0.41 | 0.00 | 0.00 | 0.32 | 0.00 | 0.55 | 1.03 | 0.20 | 0.00 | 1.08 | 0.36 | 0.74 | 0.39 | 0.83 | 1.13 | 1.07 | 0.00 | 0.49 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 2.37 | 0.54 | 0.00 | 0.00 | 0.00 | 2.00 | 0.00 | 0.00 |
| ARSB | ENSG00000113273 | 0.00 | 1.27 | 0.52 | 0.00 | 0.00 | 0.97 | 0.00 | 0.55 | 0.00 | 0.40 | 0.00 | 0.54 | 0.00 | 0.00 | 0.00 | 0.00 | 0.94 | 0.86 | 0.00 | 0.00 | 0.00 | 0.00 | 0.20 | 0.00 | 0.00 | 0.24 | 0.00 | 0.69 | 0.00 | 0.00 | 0.89 | 0.00 | 1.25 |
| ATP13A2 | ENSG00000159363 | 1.11 | 2.29 | 0.21 | 0.36 | 0.00 | 0.65 | 0.00 | 1.10 | 0.52 | 0.40 | 1.54 | 0.54 | 1.07 | 0.00 | 0.00 | 0.28 | 1.51 | 2.58 | 0.00 | 0.98 | 0.00 | 0.00 | 0.20 | 0.78 | 0.86 | 2.61 | 0.81 | 0.69 | 0.00 | 0.83 | 1.33 | 1.82 | 0.00 |
| SLC26A6 | ENSG00000225697 | 0.00 | 0.51 | 0.31 | 1.09 | 0.00 | 0.32 | 0.00 | 0.00 | 0.77 | 0.40 | 0.00 | 0.00 | 0.71 | 0.74 | 0.20 | 0.56 | 0.75 | 0.64 | 0.00 | 0.49 | 0.57 | 0.00 | 0.00 | 0.00 | 0.86 | 0.95 | 0.81 | 0.69 | 0.20 | 0.00 | 1.11 | 0.00 | 0.00 |
| CD164 | ENSG00000135535 | 0.00 | 0.25 | 0.00 | 0.00 | 0.00 | 0.32 | 0.00 | 0.00 | 0.26 | 0.00 | 0.00 | 0.00 | 0.71 | 0.00 | 0.00 | 0.28 | 0.19 | 0.21 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.24 | 0.27 | 0.00 | 0.00 | 0.00 | 0.22 | 0.00 | 0.00 |
| IGF2R | ENSG00000197081 | 2.22 | 2.29 | 1.03 | 1.82 | 0.00 | 1.29 | 0.00 | 2.76 | 1.55 | 2.19 | 0.00 | 1.63 | 2.14 | 0.00 | 0.39 | 1.94 | 3.58 | 5.15 | 0.00 | 0.74 | 1.15 | 0.00 | 0.41 | 1.56 | 0.00 | 3.08 | 2.71 | 0.69 | 0.20 | 0.83 | 6.21 | 3.64 | 0.00 |
| TNFRSF10D | ENSG00000173530 | 0.00 | 0.76 | 0.21 | 0.00 | 0.00 | 0.32 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.36 | 0.00 | 0.00 | 0.28 | 0.19 | 0.43 | 0.00 | 0.00 | 0.00 | 0.00 | 0.20 | 0.00 | 0.00 | 1.42 | 0.00 | 0.00 | 0.00 | 0.00 | 0.89 | 0.00 | 0.00 |
| OCLN | ENSG00000197822 | 0.00 | 1.02 | 0.10 | 0.00 | 0.00 | 0.65 | 0.00 | 1.10 | 0.52 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.83 | 0.38 | 0.43 | 0.00 | 0.25 | 0.00 | 0.00 | 0.00 | 0.78 | 0.43 | 1.42 | 0.54 | 0.00 | 0.20 | 0.00 | 0.67 | 0.00 | 1.25 |
| CELSR3 | ENSG00000008300 | 0.00 | 5.85 | 0.72 | 2.55 | 2.86 | 0.97 | 5.41 | 0.55 | 1.55 | 1.99 | 1.54 | 1.36 | 1.07 | 1.47 | 1.18 | 2.78 | 3.58 | 3.00 | 0.00 | 0.74 | 1.72 | 0.56 | 0.81 | 1.56 | 1.72 | 5.69 | 2.44 | 0.00 | 0.20 | 0.83 | 5.54 | 0.00 | 0.00 |
| DAG1 | ENSG00000173402 | 0.00 | 0.76 | 0.10 | 0.36 | 0.00 | 0.00 | 0.00 | 0.00 | 0.77 | 0.80 | 0.00 | 0.00 | 1.07 | 0.74 | 0.20 | 0.28 | 0.38 | 0.43 | 1.23 | 0.25 | 0.00 | 0.00 | 0.00 | 0.78 | 0.00 | 2.61 | 0.81 | 0.00 | 0.00 | 0.00 | 0.89 | 0.00 | 0.00 |
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