Copy Number

 

The putative cancer-associated PDGs driven by SCNAs in each cancer type were identified by four criteria: 1) located in a peak region of a significantly recurrent focal SNCA locus estimated by the genomic identification of significant targets in cancer (GISTIC2) algorithm, (q≤0.25); 2) altered with high frequency and large amplitude (G-score ≥0.1); 3) mRNA reliably detected in at least 10% of tumor specimens in the given cancer type (90th percentile of FPKM value ≥1); and 4) mRNA significantly and positively correlated with copy numbers (Pearson P-value less than 0.001).

 

Summary of the G-score of the PDGs in each cancer type


 Show   entries each page
 Jump to page  

 Total Page: 305 Total entries: 6083
  
 Showing page 253  first page | previous page | next page | last page 
 
KIRCKIRPKICHPRADBLCATHYMMESOLUADLUSCHNSCESCASTADCOADREADPAADLIHCCHOLACCPCPGTHCABRCAOVCESCUCECUCSSARCTGCTLAMLDLBCLGGGBMUVMSKCM
 HGNC Symbol  Ensembl Gene ID  Amp  Del  Amp  Del  Amp  Del  Amp  Del  Amp  Del  Amp  Del  Amp  Del  Amp  Del  Amp  Del  Amp  Del  Amp  Del  Amp  Del  Amp  Del  Amp  Del  Amp  Del  Amp  Del  Amp  Del  Amp  Del  Amp  Del  Amp  Del  Amp  Del  Amp  Del  Amp  Del  Amp  Del  Amp  Del  Amp  Del  Amp  Del  Amp  Del  Amp  Del  Amp  Del  Amp  Del  Amp  Del  Amp  Del 
BPHLENSG00000137274  0.01    0.00    0.00    0.01    0.00    0.00    0.01    0.04    0.19    0.11    0.00    0.06    0.02    0.01    0.10    0.02    0.09    0.10    0.05    0.06    0.09    0.24    0.05    0.10    0.02    0.03    0.02    0.06    0.00    0.09    0.17    0.02    0.06    0.08    0.04    0.05    0.01    0.01    0.00    0.00    0.09    0.08    0.44    0.11    0.10    0.06    0.08    0.02    0.21    0.05    0.06    0.14    0.04    0.03    0.00    0.00    0.10    0.01    0.02    0.04    0.03    0.03    0.22    0.00    0.23    0.00  
ATP11CENSG00000101974  0.02    0.01    0.01    0.00    0.01    0.00    0.01    0.03    0.08    0.03    0.05    0.00    0.06    0.02    0.13    0.01    0.10    0.04    0.07    0.01    0.15    0.02    0.13    0.01    0.04    0.01    0.08    0.02    0.05    0.00    0.07    0.03    0.00    0.01    0.06    0.03    0.00    0.00    0.00    0.00    0.08    0.02    0.30    0.07    0.13    0.01    0.03    0.02    0.01    0.10    0.07    0.14    0.00    0.02    0.00    0.00    0.10    0.05    0.01    0.03    0.01    0.02    0.00    0.00    0.03    0.02  
SLC25A39ENSG00000013306  0.00    0.00    0.00    0.00    0.00    0.00    0.01    0.17    0.04    0.02    0.01    0.00    0.02    0.00    0.06    0.01    0.04    0.06    0.01    0.01    0.11    0.03    0.06    0.03    0.02    0.00    0.03    0.03    0.05    0.01    0.02    0.03    0.02    0.01    0.03    0.13    0.09    0.09    0.00    0.00    0.02    0.10    0.02    0.13    0.03    0.03    0.04    0.07    0.11    0.16    0.06    0.06    0.01    0.01    0.00    0.00    0.00    0.02    0.00    0.01    0.00    0.02    0.00    0.05    0.01    0.05  
CYP1B1ENSG00000138061  0.00    0.01    0.02    0.02    0.00    0.00    0.01    0.07    0.06    0.01    0.00    0.00    0.01    0.05    0.06    0.01    0.08    0.02    0.04    0.02    0.04    0.03    0.02    0.03    0.00    0.01    0.00    0.03    0.01    0.03    0.05    0.01    0.00    0.05    0.04    0.04    0.00    0.01    0.00    0.00    0.06    0.03    0.20    0.05    0.08    0.00    0.06    0.02    0.16    0.03    0.07    0.07    0.14    0.01    0.00    0.00    0.10    0.03    0.01    0.01    0.01    0.01    0.03    0.00    0.01    0.01  
SLC22A4ENSG00000197208  0.28    0.01    0.04    0.01    0.00    0.00    0.02    0.04    0.03    0.04    0.00    0.00    0.00    0.05    0.00    0.07    0.00    0.06    0.01    0.05    0.04    0.06    0.03    0.10    0.01    0.05    0.02    0.04    0.01    0.04    0.08    0.04    0.09    0.01    0.24    0.02    0.00    0.03    0.01    0.00    0.03    0.04    0.13    0.19    0.02    0.04    0.01    0.02    0.15    0.04    0.03    0.06    0.01    0.00    0.00    0.09    0.04    0.02    0.01    0.03    0.02    0.03    0.00    0.03    0.01    0.09  
LIMK1ENSG00000106683  0.01    0.00    0.03    0.00    0.00    0.00    0.03    0.00    0.03    0.02    0.00    0.00    0.02    0.00    0.03    0.02    0.07    0.02    0.04    0.03    0.21    0.03    0.07    0.02    0.01    0.01    0.01    0.00    0.02    0.00    0.05    0.01    0.00    0.01    0.15    0.00    0.00    0.02    0.00    0.00    0.08    0.02    0.17    0.06    0.05    0.02    0.05    0.02    0.11    0.00    0.09    0.05    0.12    0.00    0.00    0.00    0.10    0.00    0.01    0.01    0.07    0.00    0.00    0.00    0.06    0.02  
GRNENSG00000030582  0.00    0.00    0.00    0.00    0.00    0.00    0.01    0.17    0.04    0.02    0.01    0.00    0.02    0.00    0.06    0.01    0.04    0.05    0.01    0.01    0.11    0.03    0.06    0.03    0.02    0.00    0.03    0.03    0.05    0.01    0.02    0.03    0.02    0.01    0.01    0.13    0.07    0.09    0.00    0.00    0.04    0.10    0.02    0.13    0.03    0.03    0.03    0.07    0.11    0.16    0.06    0.06    0.01    0.01    0.00    0.00    0.00    0.02    0.00    0.01    0.00    0.02    0.00    0.05    0.01    0.05  
BRDTENSG00000137948  0.00    0.01    0.00    0.01    0.00    0.00    0.01    0.07    0.05    0.07    0.00    0.00    0.00    0.39    0.05    0.09    0.05    0.06    0.01    0.08    0.00    0.08    0.01    0.07    0.00    0.07    0.01    0.05    0.00    0.02    0.01    0.03    0.00    0.10    0.02    0.05    0.00    0.23    0.00    0.00    0.05    0.11    0.16    0.17    0.00    0.05    0.02    0.03    0.05    0.06    0.08    0.08    0.04    0.06    0.01    0.00    0.00    0.03    0.01    0.01    0.01    0.06    0.00    0.05    0.03    0.12  
ALDH5A1ENSG00000112294  0.00    0.01    0.00    0.01    0.00    0.00    0.02    0.01    0.41    0.02    0.00    0.01    0.01    0.03    0.06    0.02    0.07    0.06    0.02    0.05    0.14    0.12    0.05    0.06    0.04    0.03    0.02    0.03    0.03    0.04    0.12    0.01    0.06    0.03    0.01    0.01    0.00    0.00    0.00    0.00    0.14    0.03    0.39    0.05    0.09    0.05    0.07    0.01    0.26    0.02    0.07    0.09    0.02    0.02    0.00    0.00    0.05    0.01    0.01    0.02    0.03    0.01    0.18    0.00    0.15    0.01  
VDRENSG00000111424  0.00    0.00    0.01    0.00    0.00    0.00    0.00    0.02    0.09    0.03    0.00    0.00    0.00    0.04    0.05    0.02    0.08    0.02    0.02    0.03    0.06    0.04    0.07    0.03    0.02    0.01    0.03    0.02    0.00    0.04    0.02    0.01    0.00    0.01    0.22    0.01    0.02    0.03    0.00    0.00    0.05    0.05    0.17    0.06    0.05    0.00    0.16    0.01    0.38    0.13    0.24    0.08    0.02    0.00    0.00    0.03    0.13    0.04    0.01    0.04    0.01    0.06    0.00    0.00    0.07    0.04  
TBXAS1ENSG00000059377  0.02    0.01    0.05    0.00    0.05    0.02    0.03    0.02    0.04    0.04    0.00    0.01    0.04    0.09    0.08    0.02    0.09    0.06    0.03    0.14    0.04    0.19    0.05    0.08    0.03    0.00    0.04    0.01    0.04    0.04    0.05    0.05    0.00    0.06    0.06    0.06    0.01    0.02    0.00    0.00    0.10    0.04    0.53    0.04    0.03    0.08    0.07    0.06    0.14    0.14    0.10    0.09    0.02    0.04    0.00    0.05    0.02    0.11    0.12    0.00    0.05    0.01    0.00    0.00    0.25    0.02  
ACHEENSG00000087085  0.02    0.00    0.05    0.00    0.00    0.00    0.06    0.02    0.07    0.01    0.00    0.00    0.03    0.00    0.11    0.01    0.21    0.02    0.22    0.01    0.47    0.03    0.21    0.02    0.02    0.00    0.02    0.00    0.08    0.01    0.06    0.02    0.11    0.01    0.08    0.03    0.00    0.02    0.00    0.00    0.07    0.03    0.20    0.05    0.08    0.01    0.06    0.02    0.15    0.03    0.07    0.04    0.07    0.01    0.00    0.00    0.13    0.00    0.07    0.00    0.03    0.01    0.00    0.00    0.05    0.03  
ORM2ENSG00000228278  0.00    0.00    0.02    0.00    0.00    0.00    0.04    0.01    0.02    0.03    0.00    0.00    0.02    0.00    0.05    0.02    0.04    0.01    0.05    0.00    0.13    0.01    0.06    0.02    0.00    0.01    0.04    0.02    0.01    0.01    0.03    0.06    0.06    0.04    0.08    0.00    0.00    0.00    0.00    0.00    0.05    0.04    0.10    0.11    0.04    0.00    0.01    0.04    0.00    0.15    0.07    0.04    0.03    0.01    0.00    0.00    0.05    0.00    0.00    0.00    0.03    0.00    0.00    0.00    0.03    0.01  
UGT1A6ENSG00000167165  0.01    0.08    0.04    0.05    0.00    0.05    0.01    0.04    0.01    0.33    0.00    0.04    0.00    0.08    0.03    0.05    0.02    0.20    0.01    0.19    0.05    0.16    0.03    0.08    0.02    0.03    0.02    0.02    0.04    0.03    0.03    0.06    0.00    0.01    0.00    0.07    0.00    0.01    0.00    0.01    0.02    0.10    0.17    0.23    0.01    0.39    0.03    0.06    0.13    0.06    0.04    0.40    0.04    0.03    0.00    0.00    0.00    0.00    0.00    0.12    0.00    0.05    0.01    0.08    0.01    0.12  
BMXENSG00000102010  0.00    0.00    0.01    0.00    0.00    0.00    0.06    0.01    0.04    0.03    0.00    0.00    0.00    0.00    0.02    0.05    0.11    0.04    0.02    0.02    0.06    0.04    0.05    0.02    0.00    0.01    0.12    0.02    0.00    0.01    0.01    0.02    0.00    0.01    0.02    0.00    0.01    0.00    0.01    0.00    0.05    0.03    0.15    0.17    0.05    0.01    0.04    0.02    0.06    0.07    0.12    0.05    0.06    0.01    0.00    0.00    0.00    0.07    0.02    0.00    0.01    0.00    0.00    0.00    0.04    0.02  
UHMK1ENSG00000152332  0.03    0.00    0.01    0.00    0.00    0.03    0.01    0.04    0.80    0.01    0.02    0.00    0.10    0.01    0.24    0.00    0.26    0.00    0.05    0.00    0.24    0.01    0.12    0.00    0.03    0.00    0.13    0.00    0.06    0.00    0.31    0.00    0.30    0.01    0.16    0.02    0.05    0.00    0.00    0.00    0.29    0.01    0.37    0.02    0.16    0.00    0.14    0.00    0.31    0.00    0.36    0.03    0.10    0.00    0.00    0.00    0.25    0.00    0.01    0.00    0.02    0.00    0.00    0.00    0.17    0.01  
PDE5AENSG00000138735  0.00    0.02    0.00    0.01    0.00    0.00    0.02    0.09    0.05    0.06    0.00    0.00    0.00    0.05    0.01    0.05    0.02    0.07    0.02    0.02    0.02    0.04    0.02    0.07    0.01    0.04    0.01    0.03    0.00    0.02    0.02    0.06    0.00    0.11    0.21    0.04    0.00    0.01    0.00    0.00    0.05    0.05    0.06    0.25    0.01    0.04    0.01    0.04    0.01    0.07    0.09    0.08    0.00    0.01    0.00    0.00    0.00    0.05    0.02    0.04    0.02    0.01    0.00    0.00    0.01    0.03  
CAMK1DENSG00000183049  0.02    0.01    0.04    0.00    0.00    0.00    0.01    0.05    0.25    0.01    0.00    0.00    0.04    0.08    0.03    0.05    0.03    0.06    0.02    0.03    0.11    0.04    0.06    0.04    0.01    0.02    0.03    0.01    0.03    0.02    0.01    0.02    0.00    0.05    0.10    0.02    0.00    0.00    0.00    0.00    0.18    0.01    0.27    0.08    0.03    0.02    0.06    0.01    0.12    0.03    0.06    0.06    0.00    0.01    0.00    0.00    0.04    0.06    0.04    0.01    0.02    0.05    0.00    0.02    0.03    0.03  
SFRP1ENSG00000104332  0.00    0.01    0.00    0.00    0.00    0.00    0.03    0.08    0.21    0.04    0.00    0.00    0.02    0.00    0.18    0.03    0.40    0.03    0.18    0.03    0.30    0.07    0.06    0.04    0.18    0.02    0.16    0.03    0.07    0.01    0.05    0.05    0.00    0.02    0.09    0.00    0.01    0.00    0.00    0.00    0.42    0.05    0.30    0.06    0.10    0.02    0.19    0.02    0.70    0.14    0.13    0.06    0.01    0.00    0.01    0.00    0.00    0.02    0.01    0.00    0.00    0.01    0.00    0.00    0.06    0.02  
BSGENSG00000172270  0.00    0.01    0.00    0.02    0.00    0.00    0.00    0.02    0.02    0.14    0.05    0.00    0.03    0.09    0.03    0.09    0.03    0.15    0.01    0.15    0.05    0.18    0.03    0.07    0.01    0.06    0.02    0.09    0.01    0.07    0.03    0.13    0.04    0.03    0.12    0.01    0.03    0.01    0.00    0.01    0.02    0.17    0.03    0.92    0.06    0.23    0.03    0.25    0.00    0.84    0.25    0.22    0.01    0.01    0.00    0.01    0.03    0.00    0.06    0.02    0.08    0.01    0.01    0.03    0.02    0.08  

 Showing page 253  		first page | previous page | next page | last page 








Contact us | | Terms & Conditions.
Copyright © 2020 University of Pennsylvania. All Rights Reserved.